miRNA display CGI

Results 1 - 20 of 1471 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6569	5'	-64	NC_001847.1	+	47	0.73	0.213295
	Target:  5'- cGCGCGGC---GCgUGCauuGCGGCGGGCg -3' miRNA:   3'- -CGCGCCGcuuCGgGCGg--CGCCGCUCG- -5'
6569	5'	-64	NC_001847.1	+	71	0.72	0.250679
	Target:  5'- gGCGCGGCG-GGCCCGggcCCGCucUGGGCu -3' miRNA:   3'- -CGCGCCGCuUCGGGC---GGCGccGCUCG- -5'
6569	5'	-64	NC_001847.1	+	254	0.66	0.534355
	Target:  5'- cGCcCGGCGcccaggggcccGAGCCCGggggccgccgagcCCGCG-CGGGCg -3' miRNA:   3'- -CGcGCCGC-----------UUCGGGC-------------GGCGCcGCUCG- -5'
6569	5'	-64	NC_001847.1	+	361	0.68	0.411153
	Target:  5'- cGCGCccCGggGCCCGCCcCGcGCGccGCg -3' miRNA:   3'- -CGCGccGCuuCGGGCGGcGC-CGCu-CG- -5'
6569	5'	-64	NC_001847.1	+	423	0.67	0.48911
	Target:  5'- cCGgGGCGGgcGGgCgGCgGCGGCG-GCg -3' miRNA:   3'- cGCgCCGCU--UCgGgCGgCGCCGCuCG- -5'
6569	5'	-64	NC_001847.1	+	453	0.72	0.234033
	Target:  5'- aGCaGCGGCGgcGgCgGCgGCGGCG-GCg -3' miRNA:   3'- -CG-CGCCGCuuCgGgCGgCGCCGCuCG- -5'
6569	5'	-64	NC_001847.1	+	489	0.68	0.431198
	Target:  5'- gGCgGCGGCGGggcGGCCgCGCgccaaccccccugucCGCGGaGGGCa -3' miRNA:   3'- -CG-CGCCGCU---UCGG-GCG---------------GCGCCgCUCG- -5'
6569	5'	-64	NC_001847.1	+	558	0.67	0.480093
	Target:  5'- -gGCGGCGGAcGCCagCGCCGCGucucCG-GCg -3' miRNA:   3'- cgCGCCGCUU-CGG--GCGGCGCc---GCuCG- -5'
6569	5'	-64	NC_001847.1	+	604	0.69	0.371306
	Target:  5'- cCGCGGCc--GCuCCGCaGCGGCGcGCg -3' miRNA:   3'- cGCGCCGcuuCG-GGCGgCGCCGCuCG- -5'
6569	5'	-64	NC_001847.1	+	760	0.76	0.135226
	Target:  5'- ---gGGCGAggccGGCCCGCCGCcGGCG-GCg -3' miRNA:   3'- cgcgCCGCU----UCGGGCGGCG-CCGCuCG- -5'
6569	5'	-64	NC_001847.1	+	807	0.67	0.48911
	Target:  5'- aCGaGGCGggGgacgaCGCCGCGGaCGAGg -3' miRNA:   3'- cGCgCCGCuuCgg---GCGGCGCC-GCUCg -5'
6569	5'	-64	NC_001847.1	+	876	0.8	0.072349
	Target:  5'- cGCGCGGCGGcggcccgcgccgGGgCCGCCGCGGCcgccGGCc -3' miRNA:   3'- -CGCGCCGCU------------UCgGGCGGCGCCGc---UCG- -5'
6569	5'	-64	NC_001847.1	+	979	0.84	0.039074
	Target:  5'- gGC-CGGCGggGCuuCCGCCGCGGCG-GCg -3' miRNA:   3'- -CGcGCCGCuuCG--GGCGGCGCCGCuCG- -5'
6569	5'	-64	NC_001847.1	+	1096	0.74	0.194155
	Target:  5'- gGCGCcGCGGccgcgggcGGCgCCGCCGCGGCcuccAGCa -3' miRNA:   3'- -CGCGcCGCU--------UCG-GGCGGCGCCGc---UCG- -5'
6569	5'	-64	NC_001847.1	+	1138	0.69	0.363659
	Target:  5'- -aGCGGCGgcGCCUcgGCgCGCGGCuccGGCn -3' miRNA:   3'- cgCGCCGCuuCGGG--CG-GCGCCGc--UCG- -5'
6569	5'	-64	NC_001847.1	+	1168	0.8	0.07421
	Target:  5'- aGCGCGGCcgcgcaGAAGgccaCCGCCGCGGCcGGCa -3' miRNA:   3'- -CGCGCCG------CUUCg---GGCGGCGCCGcUCG- -5'
6569	5'	-64	NC_001847.1	+	1258	0.71	0.299835
	Target:  5'- cGCaGCGGCGcgccGAGCCC-CCaGCGGUuGGCg -3' miRNA:   3'- -CG-CGCCGC----UUCGGGcGG-CGCCGcUCG- -5'
6569	5'	-64	NC_001847.1	+	1354	0.66	0.550406
	Target:  5'- uGCGCGGCcauguccuugcGCCCGUCGagcgcCGGC-AGCa -3' miRNA:   3'- -CGCGCCGcuu--------CGGGCGGC-----GCCGcUCG- -5'
6569	5'	-64	NC_001847.1	+	1409	0.8	0.06703
	Target:  5'- cGCGCGGCGGcacgGGCaCCGCgGUGcGCGGGCc -3' miRNA:   3'- -CGCGCCGCU----UCG-GGCGgCGC-CGCUCG- -5'
6569	5'	-64	NC_001847.1	+	1447	0.74	0.176535
	Target:  5'- cGCGUGGCcaccguguAGCgcacguugCCGCCGCGGCaGAGCc -3' miRNA:   3'- -CGCGCCGcu------UCG--------GGCGGCGCCG-CUCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home