miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6570 3' -53.6 NC_001847.1 + 117899 0.66 0.957869
Target:  5'- gGCUacCCCGUgGAGGcucggcacGCGCGCGACg -3'
miRNA:   3'- -CGAc-GGGCAgUUUUuac-----CGCGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 73525 0.66 0.957869
Target:  5'- cGCUGCaugagCCGgcugauugCGGAGGUGG-GCGCGGg -3'
miRNA:   3'- -CGACG-----GGCa-------GUUUUUACCgCGCGCUg -5'
6570 3' -53.6 NC_001847.1 + 30410 0.66 0.957869
Target:  5'- cGCUGgCCGccggCAAGcucGUGGCGgGCG-Cg -3'
miRNA:   3'- -CGACgGGCa---GUUUu--UACCGCgCGCuG- -5'
6570 3' -53.6 NC_001847.1 + 18171 0.66 0.957869
Target:  5'- cGCUcGCCCcagCGGGcccAUGGCggacGCGCGGCg -3'
miRNA:   3'- -CGA-CGGGca-GUUUu--UACCG----CGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 118245 0.66 0.957869
Target:  5'- --cGCCCGcgCGAGAccGGCGaCGCaGCg -3'
miRNA:   3'- cgaCGGGCa-GUUUUuaCCGC-GCGcUG- -5'
6570 3' -53.6 NC_001847.1 + 86414 0.66 0.957869
Target:  5'- cGCaGCUCGUgGAuuuguUGGCggcgcuGCGCGGCg -3'
miRNA:   3'- -CGaCGGGCAgUUuuu--ACCG------CGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 13444 0.66 0.957869
Target:  5'- cGCUGgCUGUaucuAGcgGGCGCGCa-- -3'
miRNA:   3'- -CGACgGGCAguu-UUuaCCGCGCGcug -5'
6570 3' -53.6 NC_001847.1 + 133774 0.66 0.957869
Target:  5'- uGCUGCCggcgcucgaCGggcgCAAGGAcaUGGCcgcgcaggGCGCGGCg -3'
miRNA:   3'- -CGACGG---------GCa---GUUUUU--ACCG--------CGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 132320 0.66 0.957869
Target:  5'- --aGCCCGccggCGGAGGUGcCGgCGCGGCu -3'
miRNA:   3'- cgaCGGGCa---GUUUUUACcGC-GCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 132277 0.66 0.957869
Target:  5'- gGCgGCCCGcgcgUCGGccuGGGcgcUGGCGCGCGcGCu -3'
miRNA:   3'- -CGaCGGGC----AGUU---UUU---ACCGCGCGC-UG- -5'
6570 3' -53.6 NC_001847.1 + 46307 0.66 0.957869
Target:  5'- cGC-GCCCGauggUCGuuacGGUGGC-CGCGACc -3'
miRNA:   3'- -CGaCGGGC----AGUuu--UUACCGcGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 30961 0.66 0.957869
Target:  5'- uGCUGCCggcgcucgaCGggcgCAAGGAcaUGGCcgcgcaggGCGCGGCg -3'
miRNA:   3'- -CGACGG---------GCa---GUUUUU--ACCG--------CGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 29464 0.66 0.957869
Target:  5'- gGCgGCCCGcgcgUCGGccuGGGcgcUGGCGCGCGcGCu -3'
miRNA:   3'- -CGaCGGGC----AGUU---UUU---ACCGCGCGC-UG- -5'
6570 3' -53.6 NC_001847.1 + 61998 0.66 0.957869
Target:  5'- --gGCCCG--AAGAGcGGCGCGgGGCc -3'
miRNA:   3'- cgaCGGGCagUUUUUaCCGCGCgCUG- -5'
6570 3' -53.6 NC_001847.1 + 29507 0.66 0.957869
Target:  5'- --aGCCCGccggCGGAGGUGcCGgCGCGGCu -3'
miRNA:   3'- cgaCGGGCa---GUUUUUACcGC-GCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 106924 0.66 0.957486
Target:  5'- cGCUGCauguucaCCGggcCGAAcgccgccGUGGCGCGCaGGCg -3'
miRNA:   3'- -CGACG-------GGCa--GUUUu------UACCGCGCG-CUG- -5'
6570 3' -53.6 NC_001847.1 + 50039 0.66 0.956713
Target:  5'- --aGCCCG-CGGGgcgcGGUGGCggccgcggguccgcGCGCGGCg -3'
miRNA:   3'- cgaCGGGCaGUUU----UUACCG--------------CGCGCUG- -5'
6570 3' -53.6 NC_001847.1 + 14323 0.66 0.953932
Target:  5'- cGCUGCUCG-CGGuggggccgGGCGUggugGCGGCg -3'
miRNA:   3'- -CGACGGGCaGUUuuua----CCGCG----CGCUG- -5'
6570 3' -53.6 NC_001847.1 + 110258 0.66 0.953932
Target:  5'- uGCUcGCCCGggaCGAGucgacGCGCuGCGACa -3'
miRNA:   3'- -CGA-CGGGCa--GUUUuuac-CGCG-CGCUG- -5'
6570 3' -53.6 NC_001847.1 + 33828 0.66 0.953932
Target:  5'- gGCUGUgCG-CAGAcGcgGGCGCGCa-- -3'
miRNA:   3'- -CGACGgGCaGUUU-UuaCCGCGCGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.