miRNA display CGI


Results 1 - 20 of 1610 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6570 5' -64.2 NC_001847.1 + 130552 0.66 0.545079
Target:  5'- uGGCCGccuucgucGCCGCG-CACCG-CGACccGCa -3'
miRNA:   3'- gCCGGU--------CGGCGCgGUGGCgGCUGu-CG- -5'
6570 5' -64.2 NC_001847.1 + 77059 0.66 0.545079
Target:  5'- gCGGCgCGGCacccgcugcggCGCGCgCGCgCGCCaaucGGCGGCc -3'
miRNA:   3'- -GCCG-GUCG-----------GCGCG-GUG-GCGG----CUGUCG- -5'
6570 5' -64.2 NC_001847.1 + 11614 0.66 0.545079
Target:  5'- nCGGCCuuGGCCuuaGCCGagcCCGC-GGCAGCc -3'
miRNA:   3'- -GCCGG--UCGGcg-CGGU---GGCGgCUGUCG- -5'
6570 5' -64.2 NC_001847.1 + 61782 0.66 0.545079
Target:  5'- -uGCCcGCCGaCcCC-CCGCCGGCAcGCg -3'
miRNA:   3'- gcCGGuCGGC-GcGGuGGCGGCUGU-CG- -5'
6570 5' -64.2 NC_001847.1 + 56617 0.66 0.545079
Target:  5'- aGGCCgaGGCCGCGgucgagcgcguCUACCGCgagcgcuacaaCGGCAcGCa -3'
miRNA:   3'- gCCGG--UCGGCGC-----------GGUGGCG-----------GCUGU-CG- -5'
6570 5' -64.2 NC_001847.1 + 81022 0.66 0.545079
Target:  5'- aGcGCaUGGgCGaCGCCGCCGCgGACuGCg -3'
miRNA:   3'- gC-CG-GUCgGC-GCGGUGGCGgCUGuCG- -5'
6570 5' -64.2 NC_001847.1 + 25749 0.66 0.545079
Target:  5'- gCGGgCGGCgGCGgCACgGCaCcGCAGCc -3'
miRNA:   3'- -GCCgGUCGgCGCgGUGgCG-GcUGUCG- -5'
6570 5' -64.2 NC_001847.1 + 53279 0.66 0.545079
Target:  5'- gCGcCCAGgCGCGCguccgccucaCGCCGCUGACGuacGCg -3'
miRNA:   3'- -GCcGGUCgGCGCG----------GUGGCGGCUGU---CG- -5'
6570 5' -64.2 NC_001847.1 + 5465 0.66 0.545079
Target:  5'- --cCCGGCCGCuCuCugCGgCGGCGGCa -3'
miRNA:   3'- gccGGUCGGCGcG-GugGCgGCUGUCG- -5'
6570 5' -64.2 NC_001847.1 + 65255 0.66 0.545079
Target:  5'- -cGCCAcCCGgGcCCGCgGCCGguccGCAGCg -3'
miRNA:   3'- gcCGGUcGGCgC-GGUGgCGGC----UGUCG- -5'
6570 5' -64.2 NC_001847.1 + 50542 0.66 0.545079
Target:  5'- aGGCgacgCAGCgGCGCUGCUGgaCCG-CGGCg -3'
miRNA:   3'- gCCG----GUCGgCGCGGUGGC--GGCuGUCG- -5'
6570 5' -64.2 NC_001847.1 + 57157 0.66 0.545079
Target:  5'- -aGCaGGgCGCGCuCGCCGCcCGcCAGCa -3'
miRNA:   3'- gcCGgUCgGCGCG-GUGGCG-GCuGUCG- -5'
6570 5' -64.2 NC_001847.1 + 120702 0.66 0.545079
Target:  5'- -aGCgCGGCCGCGCgcuCGgCGCCaaACAGCg -3'
miRNA:   3'- gcCG-GUCGGCGCG---GUgGCGGc-UGUCG- -5'
6570 5' -64.2 NC_001847.1 + 107056 0.66 0.545079
Target:  5'- gCGGCCccgGGCagGCGCCACaGCaccaGACcgGGCa -3'
miRNA:   3'- -GCCGG---UCGg-CGCGGUGgCGg---CUG--UCG- -5'
6570 5' -64.2 NC_001847.1 + 85304 0.66 0.545079
Target:  5'- gGGCCgcGGauaCGCaaGCUGCuCGCCGAUGGCc -3'
miRNA:   3'- gCCGG--UCg--GCG--CGGUG-GCGGCUGUCG- -5'
6570 5' -64.2 NC_001847.1 + 49408 0.66 0.545079
Target:  5'- uGGCgGGCucCGCGCagccuGCCGCCGuGCAcugGCg -3'
miRNA:   3'- gCCGgUCG--GCGCGg----UGGCGGC-UGU---CG- -5'
6570 5' -64.2 NC_001847.1 + 42089 0.66 0.545079
Target:  5'- uCGGCCucGCgGUGCCggcaccguccaGgCGCCGGgGGCc -3'
miRNA:   3'- -GCCGGu-CGgCGCGG-----------UgGCGGCUgUCG- -5'
6570 5' -64.2 NC_001847.1 + 17572 0.66 0.545079
Target:  5'- uGGCCGGgcagCGCGCC-CC-CCGuGCAGUu -3'
miRNA:   3'- gCCGGUCg---GCGCGGuGGcGGC-UGUCG- -5'
6570 5' -64.2 NC_001847.1 + 5070 0.66 0.545079
Target:  5'- aCGGCgGGCCGgGa-GCgGgCGGCAGUg -3'
miRNA:   3'- -GCCGgUCGGCgCggUGgCgGCUGUCG- -5'
6570 5' -64.2 NC_001847.1 + 128519 0.66 0.545079
Target:  5'- aCGGUC-GCCGC-CUACCGgCGgcuuuacuccaACAGCg -3'
miRNA:   3'- -GCCGGuCGGCGcGGUGGCgGC-----------UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.