miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 3' -56 NC_001847.1 + 53243 0.66 0.912825
Target:  5'- -uGcgCUGGcuGCGGCGccG-CCUCGGCg -3'
miRNA:   3'- cuCuaGACC--UGCUGCucCaGGAGCCG- -5'
6571 3' -56 NC_001847.1 + 23631 0.66 0.912825
Target:  5'- -uGAUCUGGGaGGCGGGcaccuuuccGUCCaUUGGCu -3'
miRNA:   3'- cuCUAGACCUgCUGCUC---------CAGG-AGCCG- -5'
6571 3' -56 NC_001847.1 + 86488 0.66 0.912825
Target:  5'- ------cGGACGACGAGG-CUgcgggggCGGCg -3'
miRNA:   3'- cucuagaCCUGCUGCUCCaGGa------GCCG- -5'
6571 3' -56 NC_001847.1 + 116615 0.66 0.909239
Target:  5'- cGGcgC-GGACGGCGGcgcgcccgcagcgcuGG-CCUCGGCa -3'
miRNA:   3'- cUCuaGaCCUGCUGCU---------------CCaGGAGCCG- -5'
6571 3' -56 NC_001847.1 + 16963 0.66 0.909239
Target:  5'- aGAGggCcGGGCGGCagauuGAGGggcaccgucaggacgUCCUUGGCa -3'
miRNA:   3'- -CUCuaGaCCUGCUG-----CUCC---------------AGGAGCCG- -5'
6571 3' -56 NC_001847.1 + 44793 0.66 0.906801
Target:  5'- cGGGA-C-GGACGACGGcGG-CUUUGGCg -3'
miRNA:   3'- -CUCUaGaCCUGCUGCU-CCaGGAGCCG- -5'
6571 3' -56 NC_001847.1 + 95879 0.66 0.906801
Target:  5'- gGAGGcgCUGGACGACaAGGagCUCgagauGGCu -3'
miRNA:   3'- -CUCUa-GACCUGCUGcUCCagGAG-----CCG- -5'
6571 3' -56 NC_001847.1 + 42546 0.66 0.900544
Target:  5'- -cGGUgaGGGCGAgGAcgcGGccgcguccUCCUCGGCg -3'
miRNA:   3'- cuCUAgaCCUGCUgCU---CC--------AGGAGCCG- -5'
6571 3' -56 NC_001847.1 + 17855 0.66 0.900544
Target:  5'- aGAGGUCgucGGGCG-CGGGGcgCCccaaaaCGGCg -3'
miRNA:   3'- -CUCUAGa--CCUGCuGCUCCa-GGa-----GCCG- -5'
6571 3' -56 NC_001847.1 + 80847 0.66 0.900544
Target:  5'- cAGAUCcGGGCGGCGgcgcgcgucgAGG-CCgucCGGCa -3'
miRNA:   3'- cUCUAGaCCUGCUGC----------UCCaGGa--GCCG- -5'
6571 3' -56 NC_001847.1 + 30185 0.66 0.900544
Target:  5'- cGGAcCUGGcCGACGcGGUgCgCGGCg -3'
miRNA:   3'- cUCUaGACCuGCUGCuCCAgGaGCCG- -5'
6571 3' -56 NC_001847.1 + 42717 0.66 0.900544
Target:  5'- cGGAUUUGGcGCGGCGGGcGgCCgcgcgggCGGCg -3'
miRNA:   3'- cUCUAGACC-UGCUGCUC-CaGGa------GCCG- -5'
6571 3' -56 NC_001847.1 + 38491 0.66 0.887337
Target:  5'- cGAGGacgUCgccgggGGGCGGCGcGGUCgC-CGGCg -3'
miRNA:   3'- -CUCU---AGa-----CCUGCUGCuCCAG-GaGCCG- -5'
6571 3' -56 NC_001847.1 + 5304 0.67 0.865856
Target:  5'- cGAGcgC--GACGGCGAgGGUCCU-GGCa -3'
miRNA:   3'- -CUCuaGacCUGCUGCU-CCAGGAgCCG- -5'
6571 3' -56 NC_001847.1 + 108117 0.67 0.865856
Target:  5'- cGAGcgC--GACGGCGAgGGUCCU-GGCa -3'
miRNA:   3'- -CUCuaGacCUGCUGCU-CCAGGAgCCG- -5'
6571 3' -56 NC_001847.1 + 89045 0.67 0.85827
Target:  5'- -cGcgCUGGGCGACGgcauggcgcgccGGGU-UUCGGCg -3'
miRNA:   3'- cuCuaGACCUGCUGC------------UCCAgGAGCCG- -5'
6571 3' -56 NC_001847.1 + 26992 0.67 0.842492
Target:  5'- --cGUCUGcGGCGGCGcGGUUgccguaCUCGGCg -3'
miRNA:   3'- cucUAGAC-CUGCUGCuCCAG------GAGCCG- -5'
6571 3' -56 NC_001847.1 + 30339 0.68 0.834315
Target:  5'- -cGggCUGGACGACGAGcaccgcgcGUUgcuggcgggccaCUCGGCg -3'
miRNA:   3'- cuCuaGACCUGCUGCUC--------CAG------------GAGCCG- -5'
6571 3' -56 NC_001847.1 + 61800 0.68 0.825954
Target:  5'- cGGGUCgcccuggccaUGGuCGAacaUGAGGUCgUCGGCg -3'
miRNA:   3'- cUCUAG----------ACCuGCU---GCUCCAGgAGCCG- -5'
6571 3' -56 NC_001847.1 + 21414 0.68 0.825954
Target:  5'- ------cGGAgGACGAGGUgCUgGGCg -3'
miRNA:   3'- cucuagaCCUgCUGCUCCAgGAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.