miRNA display CGI


Results 21 - 40 of 876 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 5' -63.3 NC_001847.1 + 13066 0.66 0.626421
Target:  5'- gUCGCCGGcguCGCCgaugAGCCgGUCGUa- -3'
miRNA:   3'- -GGCGGCCcuuGCGG----UCGGgCAGCGgg -5'
6571 5' -63.3 NC_001847.1 + 15241 0.66 0.625455
Target:  5'- gCGCCGGcGGcgGCGgCGGCCaCGcacgcgaUCGCCg -3'
miRNA:   3'- gGCGGCC-CU--UGCgGUCGG-GC-------AGCGGg -5'
6571 5' -63.3 NC_001847.1 + 58400 0.66 0.625455
Target:  5'- cCCGCCc-GAGCGCCcGaCCGUccuucccCGCCCg -3'
miRNA:   3'- -GGCGGccCUUGCGGuCgGGCA-------GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 80028 0.66 0.625455
Target:  5'- gCGCgGGGGGgGUCGGCgucaucgCCGcCGCCg -3'
miRNA:   3'- gGCGgCCCUUgCGGUCG-------GGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 100373 0.66 0.617732
Target:  5'- gCGCCGcGGccgcggcgcgcagccGCGCCAGCUCGgccgCGUCg -3'
miRNA:   3'- gGCGGC-CCu--------------UGCGGUCGGGCa---GCGGg -5'
6571 5' -63.3 NC_001847.1 + 80668 0.66 0.616766
Target:  5'- gCGCCGGGGA-GCCgaacGGCUgCG-CGCCg -3'
miRNA:   3'- gGCGGCCCUUgCGG----UCGG-GCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 18994 0.66 0.616766
Target:  5'- gCgGCCGccAGCGCCucgGGCCgCG-CGCCCc -3'
miRNA:   3'- -GgCGGCccUUGCGG---UCGG-GCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 36886 0.66 0.616766
Target:  5'- gCUGCUGGcGAcuACGCUGcCCCGcCGCCa -3'
miRNA:   3'- -GGCGGCC-CU--UGCGGUcGGGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 67896 0.66 0.616766
Target:  5'- uUCGUCG---AUGCCGGCCCagugGUCGCUCu -3'
miRNA:   3'- -GGCGGCccuUGCGGUCGGG----CAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 26363 0.66 0.616766
Target:  5'- uCUcCCGGGuGgGCC-GCCCGgcagCGUCCg -3'
miRNA:   3'- -GGcGGCCCuUgCGGuCGGGCa---GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 96852 0.66 0.616766
Target:  5'- gCGUCGGGGgcggcgguggGCGgCGGUCCG-CGCUg -3'
miRNA:   3'- gGCGGCCCU----------UGCgGUCGGGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 125399 0.66 0.616766
Target:  5'- gCC-CCGGGGcaGgGCCcGCCCgGUCGCg- -3'
miRNA:   3'- -GGcGGCCCU--UgCGGuCGGG-CAGCGgg -5'
6571 5' -63.3 NC_001847.1 + 134716 0.66 0.616766
Target:  5'- gCCGCCGc---CGCC-GCCCc-CGCCCg -3'
miRNA:   3'- -GGCGGCccuuGCGGuCGGGcaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 106144 0.66 0.616766
Target:  5'- gCCGCCGG---CGCCGGCCUccggGUagGCCa -3'
miRNA:   3'- -GGCGGCCcuuGCGGUCGGG----CAg-CGGg -5'
6571 5' -63.3 NC_001847.1 + 61274 0.66 0.616766
Target:  5'- gCGCgCGcGGGCGCC-GCgCCGcCGCCUa -3'
miRNA:   3'- gGCG-GCcCUUGCGGuCG-GGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 115063 0.66 0.616766
Target:  5'- -gGCCGGGccGCGCCGcgggagccGCCaCGcCGCUCc -3'
miRNA:   3'- ggCGGCCCu-UGCGGU--------CGG-GCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 106948 0.66 0.616766
Target:  5'- gCCGCCGuGGcGCGCaGGCgCG-CGgCCg -3'
miRNA:   3'- -GGCGGC-CCuUGCGgUCGgGCaGCgGG- -5'
6571 5' -63.3 NC_001847.1 + 22586 0.66 0.616766
Target:  5'- gCC-CCGGGGcaGgGCCcGCCCgGUCGCg- -3'
miRNA:   3'- -GGcGGCCCU--UgCGGuCGGG-CAGCGgg -5'
6571 5' -63.3 NC_001847.1 + 114158 0.66 0.616766
Target:  5'- gUGCCGauuGGGAgGCCuAGUgCGcgCGCCCg -3'
miRNA:   3'- gGCGGC---CCUUgCGG-UCGgGCa-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 3331 0.66 0.616766
Target:  5'- gCCGCCGG---CGCCGGCCUccggGUagGCCa -3'
miRNA:   3'- -GGCGGCCcuuGCGGUCGGG----CAg-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.