miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6572 3' -56.9 NC_001847.1 + 127421 0.66 0.84306
Target:  5'- --cGCGCCCGcGCC-CUG-CGCCUGAAu -3'
miRNA:   3'- gauUGCGGGU-CGGuGAUgGUGGGCUU- -5'
6572 3' -56.9 NC_001847.1 + 52101 0.66 0.84306
Target:  5'- --uGCGCUCGGUCAUgGCCACgCGGc -3'
miRNA:   3'- gauUGCGGGUCGGUGaUGGUGgGCUu -5'
6572 3' -56.9 NC_001847.1 + 132840 0.66 0.84306
Target:  5'- gCUGGgGCCCAuGCCGCccgGCgGCCCc-- -3'
miRNA:   3'- -GAUUgCGGGU-CGGUGa--UGgUGGGcuu -5'
6572 3' -56.9 NC_001847.1 + 130169 0.66 0.84306
Target:  5'- ---cCGCCgCAGCCccaGCUGCCccCCCGGc -3'
miRNA:   3'- gauuGCGG-GUCGG---UGAUGGu-GGGCUu -5'
6572 3' -56.9 NC_001847.1 + 34777 0.66 0.84306
Target:  5'- --cGCGCCgCGGCCgcggcgcgcgGCUACgACCCGc- -3'
miRNA:   3'- gauUGCGG-GUCGG----------UGAUGgUGGGCuu -5'
6572 3' -56.9 NC_001847.1 + 78141 0.66 0.84306
Target:  5'- --cGCGCgCCGGCCugcgGCUcauacCCACCCGGc -3'
miRNA:   3'- gauUGCG-GGUCGG----UGAu----GGUGGGCUu -5'
6572 3' -56.9 NC_001847.1 + 9670 0.66 0.84306
Target:  5'- cCUcGCGCCC-GCCgcgaGCUGCCG-CCGAc -3'
miRNA:   3'- -GAuUGCGGGuCGG----UGAUGGUgGGCUu -5'
6572 3' -56.9 NC_001847.1 + 30027 0.66 0.84306
Target:  5'- gCUGGgGCCCAuGCCGCccgGCgGCCCc-- -3'
miRNA:   3'- -GAUUgCGGGU-CGGUGa--UGgUGGGcuu -5'
6572 3' -56.9 NC_001847.1 + 27356 0.66 0.84306
Target:  5'- ---cCGCCgCAGCCccaGCUGCCccCCCGGc -3'
miRNA:   3'- gauuGCGG-GUCGG---UGAUGGu-GGGCUu -5'
6572 3' -56.9 NC_001847.1 + 72647 0.66 0.84306
Target:  5'- gCUGugGCC--GCCACcccgcgGCCGCCCGc- -3'
miRNA:   3'- -GAUugCGGguCGGUGa-----UGGUGGGCuu -5'
6572 3' -56.9 NC_001847.1 + 99773 0.66 0.84306
Target:  5'- -aAGCGCuCCAGCUGCgccaGCgCGCUCGGAu -3'
miRNA:   3'- gaUUGCG-GGUCGGUGa---UG-GUGGGCUU- -5'
6572 3' -56.9 NC_001847.1 + 107991 0.66 0.84306
Target:  5'- gCUGGcCGCCgCGGCUGC-GCCcCCCGGAc -3'
miRNA:   3'- -GAUU-GCGG-GUCGGUGaUGGuGGGCUU- -5'
6572 3' -56.9 NC_001847.1 + 111236 0.66 0.84306
Target:  5'- -gAGCGgCgAGCUGCUG-CGCCCGAAc -3'
miRNA:   3'- gaUUGCgGgUCGGUGAUgGUGGGCUU- -5'
6572 3' -56.9 NC_001847.1 + 64055 0.66 0.84306
Target:  5'- cCUcuCGCCUcuGGCCGC-GCCGgCCGAGc -3'
miRNA:   3'- -GAuuGCGGG--UCGGUGaUGGUgGGCUU- -5'
6572 3' -56.9 NC_001847.1 + 20977 0.66 0.838103
Target:  5'- -gAGCGCCCAgugagcgcgcGCCGCUGCaugcuggugcgaacuCACgCCGAGc -3'
miRNA:   3'- gaUUGCGGGU----------CGGUGAUG---------------GUG-GGCUU- -5'
6572 3' -56.9 NC_001847.1 + 11421 0.66 0.83476
Target:  5'- -cGAUGCCgCcGCCGCUgcuGCCGCCCc-- -3'
miRNA:   3'- gaUUGCGG-GuCGGUGA---UGGUGGGcuu -5'
6572 3' -56.9 NC_001847.1 + 117179 0.66 0.83476
Target:  5'- --cACGCCCGguGCUACUA-CGCCCGu- -3'
miRNA:   3'- gauUGCGGGU--CGGUGAUgGUGGGCuu -5'
6572 3' -56.9 NC_001847.1 + 99404 0.66 0.83476
Target:  5'- --cGCGCUugcugCAGCCACU-CCACCgCGGc -3'
miRNA:   3'- gauUGCGG-----GUCGGUGAuGGUGG-GCUu -5'
6572 3' -56.9 NC_001847.1 + 70012 0.66 0.83476
Target:  5'- -aGACGCUCAGgaagccgagccCCACcGCCAgCCGAGc -3'
miRNA:   3'- gaUUGCGGGUC-----------GGUGaUGGUgGGCUU- -5'
6572 3' -56.9 NC_001847.1 + 38759 0.66 0.83476
Target:  5'- ----nGCCCcGCCAUUGCCGCCg--- -3'
miRNA:   3'- gauugCGGGuCGGUGAUGGUGGgcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.