miRNA display CGI


Results 1 - 20 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6572 5' -59.9 NC_001847.1 + 34081 0.66 0.736989
Target:  5'- ---cCGCGGCGGCcccGGgGCCggccucggcgggUGCGCa -3'
miRNA:   3'- gaaaGUGCCGCCGc--UCgCGG------------ACGCGc -5'
6572 5' -59.9 NC_001847.1 + 79062 0.66 0.736989
Target:  5'- ---aCGCGGCGccggagcCGGGCGCgUGCGaCGu -3'
miRNA:   3'- gaaaGUGCCGCc------GCUCGCGgACGC-GC- -5'
6572 5' -59.9 NC_001847.1 + 32176 0.66 0.736989
Target:  5'- ---gCGCGGCGGagcuuGGCGCgC-GCGCGg -3'
miRNA:   3'- gaaaGUGCCGCCgc---UCGCG-GaCGCGC- -5'
6572 5' -59.9 NC_001847.1 + 18765 0.66 0.736989
Target:  5'- ---cCGCGGCuaaGGCG-GCgGCCgacaGCGCGa -3'
miRNA:   3'- gaaaGUGCCG---CCGCuCG-CGGa---CGCGC- -5'
6572 5' -59.9 NC_001847.1 + 72986 0.66 0.736989
Target:  5'- ---aCACGGCGGCcuaCGCCgccgcggccaUGCGCa -3'
miRNA:   3'- gaaaGUGCCGCCGcucGCGG----------ACGCGc -5'
6572 5' -59.9 NC_001847.1 + 29274 0.66 0.736989
Target:  5'- ---aCGUGGCGGCGAuucGCGCg-GCGCu -3'
miRNA:   3'- gaaaGUGCCGCCGCU---CGCGgaCGCGc -5'
6572 5' -59.9 NC_001847.1 + 37222 0.66 0.736989
Target:  5'- -cUUgGCGGCGGCGcggacgacccGGCGgaCgGCGCGc -3'
miRNA:   3'- gaAAgUGCCGCCGC----------UCGCg-GaCGCGC- -5'
6572 5' -59.9 NC_001847.1 + 3713 0.66 0.736989
Target:  5'- ---gCGCGGCaaucGCGcGCGCCggccacgGCGCGc -3'
miRNA:   3'- gaaaGUGCCGc---CGCuCGCGGa------CGCGC- -5'
6572 5' -59.9 NC_001847.1 + 15034 0.66 0.736989
Target:  5'- ---cCGCGGCcgccgGGCGAGCuguGCgaGCGCc -3'
miRNA:   3'- gaaaGUGCCG-----CCGCUCG---CGgaCGCGc -5'
6572 5' -59.9 NC_001847.1 + 18612 0.66 0.736989
Target:  5'- ---cCGCGGCgucGGCGcGCGCgUaGCGCa -3'
miRNA:   3'- gaaaGUGCCG---CCGCuCGCGgA-CGCGc -5'
6572 5' -59.9 NC_001847.1 + 32823 0.66 0.736989
Target:  5'- ---gCGCGaGCGcGCGAG-GCCcGCGUGg -3'
miRNA:   3'- gaaaGUGC-CGC-CGCUCgCGGaCGCGC- -5'
6572 5' -59.9 NC_001847.1 + 48838 0.66 0.736989
Target:  5'- ---cCGC-GCGG-GGGCGCCUcggccGCGCGg -3'
miRNA:   3'- gaaaGUGcCGCCgCUCGCGGA-----CGCGC- -5'
6572 5' -59.9 NC_001847.1 + 125081 0.66 0.736989
Target:  5'- ----aGCGcGCGGCGcAGCGC--GCGCGu -3'
miRNA:   3'- gaaagUGC-CGCCGC-UCGCGgaCGCGC- -5'
6572 5' -59.9 NC_001847.1 + 22268 0.66 0.736989
Target:  5'- ----aGCGcGCGGCGcAGCGC--GCGCGu -3'
miRNA:   3'- gaaagUGC-CGCCGC-UCGCGgaCGCGC- -5'
6572 5' -59.9 NC_001847.1 + 73042 0.66 0.736989
Target:  5'- ---cCGCGGacaaccugcUGGCGAagcaacGCGCCgcggGCGCGg -3'
miRNA:   3'- gaaaGUGCC---------GCCGCU------CGCGGa---CGCGC- -5'
6572 5' -59.9 NC_001847.1 + 79395 0.66 0.727354
Target:  5'- ---gCACGGcCGcGCGGGCGCgaGC-CGg -3'
miRNA:   3'- gaaaGUGCC-GC-CGCUCGCGgaCGcGC- -5'
6572 5' -59.9 NC_001847.1 + 55108 0.66 0.727354
Target:  5'- ----gGCGGCGGCGAuGaCGCCgaccccccccGCGCc -3'
miRNA:   3'- gaaagUGCCGCCGCU-C-GCGGa---------CGCGc -5'
6572 5' -59.9 NC_001847.1 + 75524 0.66 0.727354
Target:  5'- --gUCGCgGGCGGCGucUGCaUUGCGCu -3'
miRNA:   3'- gaaAGUG-CCGCCGCucGCG-GACGCGc -5'
6572 5' -59.9 NC_001847.1 + 122237 0.66 0.727354
Target:  5'- ---cCGCGGCGGCacGGCGC--GCGCu -3'
miRNA:   3'- gaaaGUGCCGCCGc-UCGCGgaCGCGc -5'
6572 5' -59.9 NC_001847.1 + 100148 0.66 0.727354
Target:  5'- ---cCGCGGcCGGgaaGAGgGCCgacaGCGCGg -3'
miRNA:   3'- gaaaGUGCC-GCCg--CUCgCGGa---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.