miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6573 3' -53.9 NC_001847.1 + 105272 0.66 0.957442
Target:  5'- -cUCCGCCGCggucguagCUACCgugugcAGcUCGCCc -3'
miRNA:   3'- gaAGGUGGCGaa------GAUGG------UCuAGCGGc -5'
6573 3' -53.9 NC_001847.1 + 101374 0.66 0.957442
Target:  5'- gCUUgCGCCGCgggggCUGCCcGcggCGCCGc -3'
miRNA:   3'- -GAAgGUGGCGaa---GAUGGuCua-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 129595 0.66 0.957442
Target:  5'- --gCUGCCGCUgCUGCCGccgcCGCCGg -3'
miRNA:   3'- gaaGGUGGCGAaGAUGGUcua-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 78405 0.66 0.957442
Target:  5'- --cCCGCCGCUgcgggcgcgCUGCUGGcgCGCgCGc -3'
miRNA:   3'- gaaGGUGGCGAa--------GAUGGUCuaGCG-GC- -5'
6573 3' -53.9 NC_001847.1 + 7820 0.66 0.957442
Target:  5'- --cCgGCCGCcUCggcGCCGG-UCGCCGu -3'
miRNA:   3'- gaaGgUGGCGaAGa--UGGUCuAGCGGC- -5'
6573 3' -53.9 NC_001847.1 + 131997 0.66 0.957442
Target:  5'- --cCCGCCGCgcc-GCCGGcgcCGCCGg -3'
miRNA:   3'- gaaGGUGGCGaagaUGGUCua-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 26782 0.66 0.957442
Target:  5'- --gCUGCCGCUgCUGCCGccgcCGCCGg -3'
miRNA:   3'- gaaGGUGGCGAaGAUGGUcua-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 29184 0.66 0.957442
Target:  5'- --cCCGCCGCgcc-GCCGGcgcCGCCGg -3'
miRNA:   3'- gaaGGUGGCGaagaUGGUCua-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 50013 0.66 0.957442
Target:  5'- --cCCACCGCcugCUGggccCCGGGcgCGCCGu -3'
miRNA:   3'- gaaGGUGGCGaa-GAU----GGUCUa-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 36565 0.66 0.957442
Target:  5'- gCUggCGCCGCgcgcCUACCuGGaCGCCGa -3'
miRNA:   3'- -GAagGUGGCGaa--GAUGGuCUaGCGGC- -5'
6573 3' -53.9 NC_001847.1 + 41622 0.66 0.953514
Target:  5'- -cUCCGCCGUgaugGCCGcGAgcggcgCGCCGg -3'
miRNA:   3'- gaAGGUGGCGaagaUGGU-CUa-----GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 121000 0.66 0.953514
Target:  5'- --gCCGCCGCUgcgcagCcgGCCGGAgacaCGCCc -3'
miRNA:   3'- gaaGGUGGCGAa-----Ga-UGGUCUa---GCGGc -5'
6573 3' -53.9 NC_001847.1 + 46765 0.66 0.953514
Target:  5'- --cCCGCCGCgcgggGCCGGucCGCCGc -3'
miRNA:   3'- gaaGGUGGCGaaga-UGGUCuaGCGGC- -5'
6573 3' -53.9 NC_001847.1 + 36599 0.66 0.953514
Target:  5'- ---aCGCCGCUcugCUACCGGGUgUGCUa -3'
miRNA:   3'- gaagGUGGCGAa--GAUGGUCUA-GCGGc -5'
6573 3' -53.9 NC_001847.1 + 107184 0.66 0.953514
Target:  5'- -cUCCACCGCg---ACCGcGAgcgcgcgCGCCGc -3'
miRNA:   3'- gaAGGUGGCGaagaUGGU-CUa------GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 6969 0.66 0.953514
Target:  5'- --gCCGCCGCcccCUGCCAuaGcUUGCCGg -3'
miRNA:   3'- gaaGGUGGCGaa-GAUGGU--CuAGCGGC- -5'
6573 3' -53.9 NC_001847.1 + 4371 0.66 0.953514
Target:  5'- -cUCCACCGCg---ACCGcGAgcgcgcgCGCCGc -3'
miRNA:   3'- gaAGGUGGCGaagaUGGU-CUa------GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 120464 0.66 0.953514
Target:  5'- -cUCCAUCGCcgCgccGCCGGccgCGCCGu -3'
miRNA:   3'- gaAGGUGGCGaaGa--UGGUCua-GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 2131 0.66 0.953514
Target:  5'- --gCCAgUGCgUCUACCAGGUuugCGCUGc -3'
miRNA:   3'- gaaGGUgGCGaAGAUGGUCUA---GCGGC- -5'
6573 3' -53.9 NC_001847.1 + 101148 0.66 0.949348
Target:  5'- --aCCGCCGCgaaggCUgggcccagcccgGCCAGcgCGCCc -3'
miRNA:   3'- gaaGGUGGCGaa---GA------------UGGUCuaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.