miRNA display CGI


Results 21 - 40 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 3' -62.3 NC_001847.1 + 124588 0.66 0.592567
Target:  5'- cGCCgGGcccGGCGC--CGGC-CGGGCGCg -3'
miRNA:   3'- aUGGaCC---UCGCGacGCUGcGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 125423 0.66 0.592567
Target:  5'- cGCgUGGcaAGCGagugGCcGCGCaGGGCGCg -3'
miRNA:   3'- aUGgACC--UCGCga--CGcUGCG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 51533 0.66 0.592567
Target:  5'- cGCCaacaugucGGAG-GCUGCG-CGCGcGCGCg -3'
miRNA:   3'- aUGGa-------CCUCgCGACGCuGCGCcCGCG- -5'
6574 3' -62.3 NC_001847.1 + 111792 0.66 0.592567
Target:  5'- gGCCcgGGGGCGg-GCaGACGgGGGUGg -3'
miRNA:   3'- aUGGa-CCUCGCgaCG-CUGCgCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 21775 0.66 0.592567
Target:  5'- cGCCgGGcccGGCGC--CGGC-CGGGCGCg -3'
miRNA:   3'- aUGGaCC---UCGCGacGCUGcGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 22610 0.66 0.592567
Target:  5'- cGCgUGGcaAGCGagugGCcGCGCaGGGCGCg -3'
miRNA:   3'- aUGgACC--UCGCga--CGcUGCG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 1902 0.66 0.592567
Target:  5'- cGCC-GcGAGCGCgUGCGAgagccCGCcGcGGCGCg -3'
miRNA:   3'- aUGGaC-CUCGCG-ACGCU-----GCG-C-CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 125208 0.66 0.592567
Target:  5'- cGCCcGGGcCGCgGCGAgcgugcucgucCGCGGGgGCg -3'
miRNA:   3'- aUGGaCCUcGCGaCGCU-----------GCGCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 101353 0.66 0.592567
Target:  5'- gGCUcGGGgcugcaugcgcGCGCuUGCGcCGCGGGgGCu -3'
miRNA:   3'- aUGGaCCU-----------CGCG-ACGCuGCGCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 22395 0.66 0.592567
Target:  5'- cGCCcGGGcCGCgGCGAgcgugcucgucCGCGGGgGCg -3'
miRNA:   3'- aUGGaCCUcGCGaCGCU-----------GCGCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 93398 0.66 0.592567
Target:  5'- -cCCUGGAGUacaucUUGCGGCuaauggccaGCuGGGCGCa -3'
miRNA:   3'- auGGACCUCGc----GACGCUG---------CG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 98592 0.66 0.592567
Target:  5'- --aUUGGGGCGCcggcgcuuggGCGGCGCGGcacccCGCa -3'
miRNA:   3'- augGACCUCGCGa---------CGCUGCGCCc----GCG- -5'
6574 3' -62.3 NC_001847.1 + 14920 0.66 0.592567
Target:  5'- cUGCCUcGccGCgauacacaagGCUGCGA-GCGGGCGCc -3'
miRNA:   3'- -AUGGA-CcuCG----------CGACGCUgCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 116105 0.66 0.591577
Target:  5'- gACCUGcGGGCuGCUucucggccuuucgGCcgGGCGCugGGGCGCg -3'
miRNA:   3'- aUGGAC-CUCG-CGA-------------CG--CUGCG--CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 52574 0.66 0.591577
Target:  5'- gAgCUGGAGCucgagGCgGCGGCcgaggccgagcccGCGGGCGg -3'
miRNA:   3'- aUgGACCUCG-----CGaCGCUG-------------CGCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 107697 0.66 0.582681
Target:  5'- cGCCUGcGGUugGCgGCGcuCGCGGGCGg -3'
miRNA:   3'- aUGGACcUCG--CGaCGCu-GCGCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 86726 0.66 0.582681
Target:  5'- gUACCc-GAGCGCcgGCGACGCGuccCGCu -3'
miRNA:   3'- -AUGGacCUCGCGa-CGCUGCGCcc-GCG- -5'
6574 3' -62.3 NC_001847.1 + 46888 0.66 0.582681
Target:  5'- cGCgUGcGAGCGCcgcuucaGCGAgGCuucgggGGGCGCg -3'
miRNA:   3'- aUGgAC-CUCGCGa------CGCUgCG------CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 115576 0.66 0.582681
Target:  5'- ----cGGGcCGCgGCGAuCGCGGGCGUc -3'
miRNA:   3'- auggaCCUcGCGaCGCU-GCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 100854 0.66 0.582681
Target:  5'- gGCC-GGAGCGCcgGCccgccgggggucGGCGgcagGGGCGCg -3'
miRNA:   3'- aUGGaCCUCGCGa-CG------------CUGCg---CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.