Results 21 - 40 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6574 | 5' | -53.1 | NC_001847.1 | + | 49585 | 0.66 | 0.965557 |
Target: 5'- cCGaCGGCGGCGccUGGGCGCaGCgGGAGc -3' miRNA: 3'- cGC-GUUGCUGU--ACCUGCG-CGaCUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 28454 | 0.66 | 0.965557 |
Target: 5'- gGCGCcgcGCGACG-GGcCGCcgccGCUGGAGg -3' miRNA: 3'- -CGCGu--UGCUGUaCCuGCG----CGACUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 92988 | 0.66 | 0.965557 |
Target: 5'- cGUGCAGCcACAcGcGA-GCGCUGGAGg -3' miRNA: 3'- -CGCGUUGcUGUaC-CUgCGCGACUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 49756 | 0.66 | 0.965224 |
Target: 5'- uUGCGGCGGCGuaucauaUGaACGCGCUGgcGa -3' miRNA: 3'- cGCGUUGCUGU-------ACcUGCGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 78388 | 0.66 | 0.964552 |
Target: 5'- gGCGCAugGccgaggaccccgccGCugcGGGCGCGCUGcuGg -3' miRNA: 3'- -CGCGUugC--------------UGua-CCUGCGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 52348 | 0.66 | 0.964552 |
Target: 5'- aGCGCuccgcgagauuaucAACGGCAgcaacGGCGCGCUGgcGc -3' miRNA: 3'- -CGCG--------------UUGCUGUac---CUGCGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 35990 | 0.66 | 0.962127 |
Target: 5'- cGCGCAgccgcgcugcagGCGGCcgcGGGCGUgguGCUGggGc -3' miRNA: 3'- -CGCGU------------UGCUGua-CCUGCG---CGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 52716 | 0.66 | 0.962127 |
Target: 5'- aGCGCccCGACcUGGACGaGCUGuuuGAGa -3' miRNA: 3'- -CGCGuuGCUGuACCUGCgCGAC---UUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 82022 | 0.66 | 0.962127 |
Target: 5'- cGCGCAGuCGGCGcUGGcCGaCGC-GGAGUu -3' miRNA: 3'- -CGCGUU-GCUGU-ACCuGC-GCGaCUUCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 72965 | 0.66 | 0.962127 |
Target: 5'- cGCGCGGauugggGACGcGGACGCGCccgcgcgGGAGc -3' miRNA: 3'- -CGCGUUg-----CUGUaCCUGCGCGa------CUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 99315 | 0.66 | 0.962127 |
Target: 5'- cGCGCAGCG-CGUcGAUGCGCUc---- -3' miRNA: 3'- -CGCGUUGCuGUAcCUGCGCGAcuuca -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 48175 | 0.66 | 0.961053 |
Target: 5'- aGCaGCAugGGCGUgaacacgggcucgGGGCGCGCggcgcugcugucGAAGUa -3' miRNA: 3'- -CG-CGUugCUGUA-------------CCUGCGCGa-----------CUUCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 87584 | 0.66 | 0.959958 |
Target: 5'- uGCGCGGCcGCcgGGcuccccgcgcccgcCGUGCUGGAGUu -3' miRNA: 3'- -CGCGUUGcUGuaCCu-------------GCGCGACUUCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 34818 | 0.66 | 0.958466 |
Target: 5'- gGCGCGGCaGGCc--GACcggGCGCUGGAGg -3' miRNA: 3'- -CGCGUUG-CUGuacCUG---CGCGACUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 1409 | 0.66 | 0.958466 |
Target: 5'- cGCGCGGCGGCAcGGGCaccgcgguGCGCgGGcccAGg -3' miRNA: 3'- -CGCGUUGCUGUaCCUG--------CGCGaCU---UCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 53342 | 0.66 | 0.958466 |
Target: 5'- cCGCAGCGGaaaGcGACGCGCUGcuGg -3' miRNA: 3'- cGCGUUGCUguaC-CUGCGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 30050 | 0.66 | 0.958466 |
Target: 5'- uGgGCGACGuugccgGCGcGGugGCGCggcugGGAGUg -3' miRNA: 3'- -CgCGUUGC------UGUaCCugCGCGa----CUUCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 104222 | 0.66 | 0.958466 |
Target: 5'- cGCGCGGCGGCAcGGGCaccgcgguGCGCgGGcccAGg -3' miRNA: 3'- -CGCGUUGCUGUaCCUG--------CGCGaCU---UCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 46022 | 0.66 | 0.958466 |
Target: 5'- cGCGCGcACGACcaccgGGGCGgCGCUGc--- -3' miRNA: 3'- -CGCGU-UGCUGua---CCUGC-GCGACuuca -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 47965 | 0.66 | 0.958466 |
Target: 5'- -aGCAGCG-CGUGGAgGaUGUUGAGGc -3' miRNA: 3'- cgCGUUGCuGUACCUgC-GCGACUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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