miRNA display CGI


Results 1 - 20 of 530 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6576 3' -57 NC_001847.1 + 130067 0.65 0.866791
Target:  5'- cGGCGaCGCGucgccguccUGGGCCGCGCCc- -3'
miRNA:   3'- cUCGC-GCGCuaau-----GCCUGGUGCGGuc -5'
6576 3' -57 NC_001847.1 + 46920 0.65 0.866791
Target:  5'- gGGGCGCGuCGGgcccgggcucCGGGCCGCGUgCGGc -3'
miRNA:   3'- -CUCGCGC-GCUaau-------GCCUGGUGCG-GUC- -5'
6576 3' -57 NC_001847.1 + 40529 0.65 0.866791
Target:  5'- -uGCGCGCGAcgcgcgacgugcUGCGGcAgCGCGCCGc -3'
miRNA:   3'- cuCGCGCGCUa-----------AUGCC-UgGUGCGGUc -5'
6576 3' -57 NC_001847.1 + 133630 0.66 0.863783
Target:  5'- -cGCGCGCGGggggaacacaACGGGCCaaggcaaauaauuggGCGUCGGc -3'
miRNA:   3'- cuCGCGCGCUaa--------UGCCUGG---------------UGCGGUC- -5'
6576 3' -57 NC_001847.1 + 101464 0.66 0.861506
Target:  5'- cGAGCGCcuGCGccucuagccccgcGCGGGCCGCgGCCAc -3'
miRNA:   3'- -CUCGCG--CGCuaa----------UGCCUGGUG-CGGUc -5'
6576 3' -57 NC_001847.1 + 23836 0.66 0.860742
Target:  5'- cAGCGCGCGc--ACGGcCCcgaGCCGGc -3'
miRNA:   3'- cUCGCGCGCuaaUGCCuGGug-CGGUC- -5'
6576 3' -57 NC_001847.1 + 6744 0.66 0.860742
Target:  5'- uAGCGgGCGucgucUGCGGugCggccggugcgagGCGCCAGc -3'
miRNA:   3'- cUCGCgCGCua---AUGCCugG------------UGCGGUC- -5'
6576 3' -57 NC_001847.1 + 50268 0.66 0.860742
Target:  5'- -cGCGCuggGCGcgUACguGGGCCGCcuaGCCGGg -3'
miRNA:   3'- cuCGCG---CGCuaAUG--CCUGGUG---CGGUC- -5'
6576 3' -57 NC_001847.1 + 85151 0.66 0.860742
Target:  5'- uGGGCGCGCGGgcuccucucGCGGagggcgugcacgGCCugcgcguacucgGCGCCGGg -3'
miRNA:   3'- -CUCGCGCGCUaa-------UGCC------------UGG------------UGCGGUC- -5'
6576 3' -57 NC_001847.1 + 38016 0.66 0.860742
Target:  5'- cAGCucGCGCGggUGCuguGGGCgCGCGCCGc -3'
miRNA:   3'- cUCG--CGCGCuaAUG---CCUG-GUGCGGUc -5'
6576 3' -57 NC_001847.1 + 12455 0.66 0.860742
Target:  5'- cAGCGCGCGcg-GCGGAgccuCCGCGgCu- -3'
miRNA:   3'- cUCGCGCGCuaaUGCCU----GGUGCgGuc -5'
6576 3' -57 NC_001847.1 + 33436 0.66 0.860742
Target:  5'- cGGGCGCucgGCGuc-GCGGGCguCGCUGGa -3'
miRNA:   3'- -CUCGCG---CGCuaaUGCCUGguGCGGUC- -5'
6576 3' -57 NC_001847.1 + 54677 0.66 0.860742
Target:  5'- gGAGCGCGgccCGAcgGCGGcgGCgGCGCCc- -3'
miRNA:   3'- -CUCGCGC---GCUaaUGCC--UGgUGCGGuc -5'
6576 3' -57 NC_001847.1 + 64845 0.66 0.860742
Target:  5'- cGAGaccaGCGCGGcgcgcCGcGACC-CGCCAGg -3'
miRNA:   3'- -CUCg---CGCGCUaau--GC-CUGGuGCGGUC- -5'
6576 3' -57 NC_001847.1 + 65987 0.66 0.860742
Target:  5'- cAGCagGCGgGAUUcagcccgaagGCGGacGCCGCGCCAa -3'
miRNA:   3'- cUCG--CGCgCUAA----------UGCC--UGGUGCGGUc -5'
6576 3' -57 NC_001847.1 + 103033 0.66 0.860742
Target:  5'- -nGCG-GCGG--GCGGGCCGCaGCCGc -3'
miRNA:   3'- cuCGCgCGCUaaUGCCUGGUG-CGGUc -5'
6576 3' -57 NC_001847.1 + 120697 0.66 0.860742
Target:  5'- cGAGCaGCGCGGccGCGcGCUcgGCGCCAa -3'
miRNA:   3'- -CUCG-CGCGCUaaUGCcUGG--UGCGGUc -5'
6576 3' -57 NC_001847.1 + 134203 0.66 0.860742
Target:  5'- gGAGCgGCGCGc--GCGGGCCgaggGCGgCGGu -3'
miRNA:   3'- -CUCG-CGCGCuaaUGCCUGG----UGCgGUC- -5'
6576 3' -57 NC_001847.1 + 80963 0.66 0.860742
Target:  5'- cGAGCGCGCGGUcaaagUgcuccggggaGCGG-CCaaagaGCGCCAu -3'
miRNA:   3'- -CUCGCGCGCUA-----A----------UGCCuGG-----UGCGGUc -5'
6576 3' -57 NC_001847.1 + 85585 0.66 0.860742
Target:  5'- cGGCGC-CGucgACGGG-CGCGCCGGc -3'
miRNA:   3'- cUCGCGcGCuaaUGCCUgGUGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.