miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6576 5' -52.2 NC_001847.1 + 112399 0.66 0.978089
Target:  5'- aUUUGGUUGCGcgCC---GCGCGG-Ca -3'
miRNA:   3'- gAGACCGACGCuaGGuuuUGUGCCaG- -5'
6576 5' -52.2 NC_001847.1 + 23984 0.66 0.978089
Target:  5'- cCUCcGucacCUGCGA-CgAGGACACGGUCg -3'
miRNA:   3'- -GAGaCc---GACGCUaGgUUUUGUGCCAG- -5'
6576 5' -52.2 NC_001847.1 + 41258 0.66 0.978089
Target:  5'- ---gGGCUGCcauuuuuugCCGGcGCGCGGUCa -3'
miRNA:   3'- gagaCCGACGcua------GGUUuUGUGCCAG- -5'
6576 5' -52.2 NC_001847.1 + 107115 0.66 0.975565
Target:  5'- gUCUGGCgugugcagGCGcUCguAAGCGCGG-Ca -3'
miRNA:   3'- gAGACCGa-------CGCuAGguUUUGUGCCaG- -5'
6576 5' -52.2 NC_001847.1 + 102932 0.66 0.975565
Target:  5'- -cCUGGacgGCG-UCCAAGGcCGCGGUa -3'
miRNA:   3'- gaGACCga-CGCuAGGUUUU-GUGCCAg -5'
6576 5' -52.2 NC_001847.1 + 43264 0.66 0.975565
Target:  5'- uCUCUGuGCUGCGcGUCCGGcGCuuCGGc- -3'
miRNA:   3'- -GAGAC-CGACGC-UAGGUUuUGu-GCCag -5'
6576 5' -52.2 NC_001847.1 + 95253 0.66 0.972835
Target:  5'- aUCgggGGC-GCGAUCgGGGGCGCGaUCg -3'
miRNA:   3'- gAGa--CCGaCGCUAGgUUUUGUGCcAG- -5'
6576 5' -52.2 NC_001847.1 + 95217 0.66 0.972835
Target:  5'- aUCgggGGC-GCGAUCgGGGGCGCGaUCg -3'
miRNA:   3'- gAGa--CCGaCGCUAGgUUUUGUGCcAG- -5'
6576 5' -52.2 NC_001847.1 + 95181 0.66 0.972835
Target:  5'- aUCgggGGC-GCGAUCgGGGGCGCGaUCg -3'
miRNA:   3'- gAGa--CCGaCGCUAGgUUUUGUGCcAG- -5'
6576 5' -52.2 NC_001847.1 + 52934 0.66 0.972835
Target:  5'- gUCUGGC-GCGGUucgaCCGAGGcCGCGG-Cg -3'
miRNA:   3'- gAGACCGaCGCUA----GGUUUU-GUGCCaG- -5'
6576 5' -52.2 NC_001847.1 + 53262 0.66 0.969892
Target:  5'- cCUCggcgggGcGCUGCGcgCCcAGGCGCGcGUCc -3'
miRNA:   3'- -GAGa-----C-CGACGCuaGGuUUUGUGC-CAG- -5'
6576 5' -52.2 NC_001847.1 + 121699 0.66 0.969892
Target:  5'- gCUC-GGCUuCGGUC---GACACGGUCu -3'
miRNA:   3'- -GAGaCCGAcGCUAGguuUUGUGCCAG- -5'
6576 5' -52.2 NC_001847.1 + 58159 0.66 0.969892
Target:  5'- cCUCgaGGCggGCGA-CCGcgGCGgGGUCg -3'
miRNA:   3'- -GAGa-CCGa-CGCUaGGUuuUGUgCCAG- -5'
6576 5' -52.2 NC_001847.1 + 64674 0.66 0.969585
Target:  5'- cCUCUGGcCUGCGGgacaccauguuuuUCCugccgcGCGCGGcCg -3'
miRNA:   3'- -GAGACC-GACGCU-------------AGGuuu---UGUGCCaG- -5'
6576 5' -52.2 NC_001847.1 + 14946 0.66 0.968653
Target:  5'- -gCUGGCUGCuguGGUUCAuggacgccucgauGGCACGGUg -3'
miRNA:   3'- gaGACCGACG---CUAGGUu------------UUGUGCCAg -5'
6576 5' -52.2 NC_001847.1 + 43437 0.66 0.966727
Target:  5'- -gCUGGCcggcgucGCGAcCCGGggcgacGGCGCGGUCg -3'
miRNA:   3'- gaGACCGa------CGCUaGGUU------UUGUGCCAG- -5'
6576 5' -52.2 NC_001847.1 + 96548 0.66 0.966727
Target:  5'- ---cGGCUGUGcagCCGcgcGCGCGGUCu -3'
miRNA:   3'- gagaCCGACGCua-GGUuu-UGUGCCAG- -5'
6576 5' -52.2 NC_001847.1 + 56028 0.66 0.966398
Target:  5'- -cCUGGCgGCGGgccuucuUCCAcAGGCACGG-Cg -3'
miRNA:   3'- gaGACCGaCGCU-------AGGU-UUUGUGCCaG- -5'
6576 5' -52.2 NC_001847.1 + 17354 0.67 0.964719
Target:  5'- -gCUGGCUGgGGUUCGAcggaaacagcgggcGCGCGGUg -3'
miRNA:   3'- gaGACCGACgCUAGGUUu-------------UGUGCCAg -5'
6576 5' -52.2 NC_001847.1 + 36961 0.67 0.959708
Target:  5'- ---gGGCUGCGG-CCA--GCGCGGg- -3'
miRNA:   3'- gagaCCGACGCUaGGUuuUGUGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.