miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6577 3' -61.4 NC_001847.1 + 32073 0.66 0.65481
Target:  5'- cCGGGCu-CGggccccuggGcGCCGGGCgucggGGCGCGa -3'
miRNA:   3'- -GCCCGuuGCa--------C-CGGCUCGa----CCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 42995 0.66 0.65481
Target:  5'- cCGGG-AACGccGCCGGGggGGCGCGc -3'
miRNA:   3'- -GCCCgUUGCacCGGCUCgaCCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 134886 0.66 0.65481
Target:  5'- cCGGGCu-CGggccccuggGcGCCGGGCgucggGGCGCGa -3'
miRNA:   3'- -GCCCGuuGCa--------C-CGGCUCGa----CCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 132273 0.66 0.65481
Target:  5'- gCGcGGCGgcccgcGCGUcGGCCuGGgcGCUGGCGCGc -3'
miRNA:   3'- -GC-CCGU------UGCA-CCGG-CU--CGACCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 64334 0.66 0.65481
Target:  5'- aGGGCAcccGCGUGGCCuGGUacacGCGCu- -3'
miRNA:   3'- gCCCGU---UGCACCGGcUCGac--CGCGuc -5'
6577 3' -61.4 NC_001847.1 + 29460 0.66 0.65481
Target:  5'- gCGcGGCGgcccgcGCGUcGGCCuGGgcGCUGGCGCGc -3'
miRNA:   3'- -GC-CCGU------UGCA-CCGG-CU--CGACCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 62142 0.66 0.65481
Target:  5'- aGcGGCGuGCGcaUGGCCGcGGC-GGCGUAGg -3'
miRNA:   3'- gC-CCGU-UGC--ACCGGC-UCGaCCGCGUC- -5'
6577 3' -61.4 NC_001847.1 + 116658 0.66 0.65481
Target:  5'- gCGGGCAcgcugguggccuGCGUgugGGuCCGGcGCUgcgGGCGCGGc -3'
miRNA:   3'- -GCCCGU------------UGCA---CC-GGCU-CGA---CCGCGUC- -5'
6577 3' -61.4 NC_001847.1 + 36975 0.66 0.653813
Target:  5'- gCGGGCGccggcgaGCGggcccGcGCCGAGCggcggcGGCGCGc -3'
miRNA:   3'- -GCCCGU-------UGCa----C-CGGCUCGa-----CCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 3158 0.66 0.648828
Target:  5'- gCGGcGCGGCG-GGCCGccuccagcgccucgcGGCaggcgacGGCGCAGc -3'
miRNA:   3'- -GCC-CGUUGCaCCGGC---------------UCGa------CCGCGUC- -5'
6577 3' -61.4 NC_001847.1 + 105971 0.66 0.648828
Target:  5'- gCGGcGCGGCG-GGCCGccuccagcgccucgcGGCaggcgacGGCGCAGc -3'
miRNA:   3'- -GCC-CGUUGCaCCGGC---------------UCGa------CCGCGUC- -5'
6577 3' -61.4 NC_001847.1 + 6746 0.66 0.644838
Target:  5'- gCGGGCGucgucuGCGgugcGGCCGGuGCgaGGCGcCAGc -3'
miRNA:   3'- -GCCCGU------UGCa---CCGGCU-CGa-CCGC-GUC- -5'
6577 3' -61.4 NC_001847.1 + 57651 0.66 0.644838
Target:  5'- aGGGCcugGGCGccGUCGGGCaGGCGguGg -3'
miRNA:   3'- gCCCG---UUGCacCGGCUCGaCCGCguC- -5'
6577 3' -61.4 NC_001847.1 + 48204 0.66 0.644838
Target:  5'- -cGGCGGCcagGGCCGAGgaG-CGCAGc -3'
miRNA:   3'- gcCCGUUGca-CCGGCUCgaCcGCGUC- -5'
6577 3' -61.4 NC_001847.1 + 104233 0.66 0.644838
Target:  5'- aCGGGCAccGCG-GuGCgCGGGCccaGGCGCGu -3'
miRNA:   3'- -GCCCGU--UGCaC-CG-GCUCGa--CCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 33574 0.66 0.644838
Target:  5'- gGGGCGucugGCGcGGcCCGGGCUcGGCggccuGCGGa -3'
miRNA:   3'- gCCCGU----UGCaCC-GGCUCGA-CCG-----CGUC- -5'
6577 3' -61.4 NC_001847.1 + 47686 0.66 0.644838
Target:  5'- gCGGGCGcgcgccGCGgGGCCguuGAGC-GcGCGCAGc -3'
miRNA:   3'- -GCCCGU------UGCaCCGG---CUCGaC-CGCGUC- -5'
6577 3' -61.4 NC_001847.1 + 1420 0.66 0.644838
Target:  5'- aCGGGCAccGCG-GuGCgCGGGCccaGGCGCGu -3'
miRNA:   3'- -GCCCGU--UGCaC-CG-GCUCGa--CCGCGUc -5'
6577 3' -61.4 NC_001847.1 + 27872 0.66 0.63885
Target:  5'- gGGGCGccgaggacgcggACGUcgcggagugcgccgaGGCCGAGggGGCGgAGg -3'
miRNA:   3'- gCCCGU------------UGCA---------------CCGGCUCgaCCGCgUC- -5'
6577 3' -61.4 NC_001847.1 + 130685 0.66 0.63885
Target:  5'- gGGGCGccgaggacgcggACGUcgcggagugcgccgaGGCCGAGggGGCGgAGg -3'
miRNA:   3'- gCCCGU------------UGCA---------------CCGGCUCgaCCGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.