miRNA display CGI


Results 21 - 40 of 523 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6577 5' -57.3 NC_001847.1 + 8464 0.66 0.814963
Target:  5'- gGCgGCGCCgggccgggggcggcGCU-CGGCCGgGGGCGGg -3'
miRNA:   3'- aCGaCGCGG--------------UGAcGCUGGUgUUCGUC- -5'
6577 5' -57.3 NC_001847.1 + 101468 0.66 0.812312
Target:  5'- nGcCUGCGCCucuagccccgcgcggGCcGCGGCCACGcGCGc -3'
miRNA:   3'- aC-GACGCGG---------------UGaCGCUGGUGUuCGUc -5'
6577 5' -57.3 NC_001847.1 + 79314 0.66 0.809646
Target:  5'- aGCUGCGCguCAUggacgacgacgucacGCGACUgcucGCGAGCAGc -3'
miRNA:   3'- aCGACGCG--GUGa--------------CGCUGG----UGUUCGUC- -5'
6577 5' -57.3 NC_001847.1 + 104738 0.66 0.808754
Target:  5'- cGCcGCGgCGCgGCGGCCACucGGGCc- -3'
miRNA:   3'- aCGaCGCgGUGaCGCUGGUG--UUCGuc -5'
6577 5' -57.3 NC_001847.1 + 90854 0.66 0.808754
Target:  5'- cGCcGCGCCGCgccGCG-CCGCcgguguGGUAGa -3'
miRNA:   3'- aCGaCGCGGUGa--CGCuGGUGu-----UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 72993 0.66 0.808754
Target:  5'- gGCcuaCGCCGCcGCGGCCAUgcGCAc -3'
miRNA:   3'- aCGac-GCGGUGaCGCUGGUGuuCGUc -5'
6577 5' -57.3 NC_001847.1 + 3043 0.66 0.808754
Target:  5'- cUGC-GCGCC-CaGCaGCCGCAGGCGc -3'
miRNA:   3'- -ACGaCGCGGuGaCGcUGGUGUUCGUc -5'
6577 5' -57.3 NC_001847.1 + 106531 0.66 0.808754
Target:  5'- cGCgGcCGCCGCguagcgcGCGGCCGCcucGCGGa -3'
miRNA:   3'- aCGaC-GCGGUGa------CGCUGGUGuu-CGUC- -5'
6577 5' -57.3 NC_001847.1 + 88293 0.66 0.808754
Target:  5'- cUGCUGgGCCGacGCGGCUcgcgGCGAGgAGg -3'
miRNA:   3'- -ACGACgCGGUgaCGCUGG----UGUUCgUC- -5'
6577 5' -57.3 NC_001847.1 + 85102 0.66 0.808754
Target:  5'- cGCgGcCGCCACcGCGccCCGCGGGCuGg -3'
miRNA:   3'- aCGaC-GCGGUGaCGCu-GGUGUUCGuC- -5'
6577 5' -57.3 NC_001847.1 + 20618 0.66 0.808754
Target:  5'- gUGUUcccGCGCCGC-GcCGACCGCu-GCAGu -3'
miRNA:   3'- -ACGA---CGCGGUGaC-GCUGGUGuuCGUC- -5'
6577 5' -57.3 NC_001847.1 + 26781 0.66 0.808754
Target:  5'- cGCUGcCGCUGCUGCcGCCGCcgccgguGCGa -3'
miRNA:   3'- aCGAC-GCGGUGACGcUGGUGuu-----CGUc -5'
6577 5' -57.3 NC_001847.1 + 3718 0.66 0.808754
Target:  5'- cGCgGcCGCCGCguagcgcGCGGCCGCcucGCGGa -3'
miRNA:   3'- aCGaC-GCGGUGa------CGCUGGUGuu-CGUC- -5'
6577 5' -57.3 NC_001847.1 + 1925 0.66 0.808754
Target:  5'- cGCcGCGgCGCgGCGGCCACucgGGCc- -3'
miRNA:   3'- aCGaCGCgGUGaCGCUGGUGu--UCGuc -5'
6577 5' -57.3 NC_001847.1 + 4983 0.66 0.808754
Target:  5'- aGCUGgGgUGCgGCGGCCGC-GGCAa -3'
miRNA:   3'- aCGACgCgGUGaCGCUGGUGuUCGUc -5'
6577 5' -57.3 NC_001847.1 + 78313 0.66 0.808754
Target:  5'- cGCgGCGCgGCgcGCGcGCCGCGGGCc- -3'
miRNA:   3'- aCGaCGCGgUGa-CGC-UGGUGUUCGuc -5'
6577 5' -57.3 NC_001847.1 + 119682 0.66 0.808754
Target:  5'- cUGC-GCGCCG-UGCGccGCCACGcuuuucAGCAGc -3'
miRNA:   3'- -ACGaCGCGGUgACGC--UGGUGU------UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 134088 0.66 0.808754
Target:  5'- aGCccgGCGCCGCcGCuuGCUcugGCGAGCAGa -3'
miRNA:   3'- aCGa--CGCGGUGaCGc-UGG---UGUUCGUC- -5'
6577 5' -57.3 NC_001847.1 + 52541 0.66 0.808754
Target:  5'- aGC-GCGCgGCgcacagGCGccGCCGCGAGCGc -3'
miRNA:   3'- aCGaCGCGgUGa-----CGC--UGGUGUUCGUc -5'
6577 5' -57.3 NC_001847.1 + 129594 0.66 0.808754
Target:  5'- cGCUGcCGCUGCUGCcGCCGCcgccgguGCGa -3'
miRNA:   3'- aCGAC-GCGGUGACGcUGGUGuu-----CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.