miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6579 3' -64.1 NC_001847.1 + 97042 0.66 0.543393
Target:  5'- cCGGGCaGCgGCGuCCgGGCUGcuuuccccgaccgcGGCGg -3'
miRNA:   3'- aGCCCG-CGaCGCuGGgCCGACa-------------CCGC- -5'
6579 3' -64.1 NC_001847.1 + 28854 0.66 0.539597
Target:  5'- gCGGccGCGCgcGCGACgCCGGCggcgcuggGGCGa -3'
miRNA:   3'- aGCC--CGCGa-CGCUG-GGCCGaca-----CCGC- -5'
6579 3' -64.1 NC_001847.1 + 125740 0.66 0.539597
Target:  5'- gUGGGCugGCUG-GGCUgGGCUG-GGCu -3'
miRNA:   3'- aGCCCG--CGACgCUGGgCCGACaCCGc -5'
6579 3' -64.1 NC_001847.1 + 27210 0.66 0.539597
Target:  5'- aCGGGCGCgccgggGCG-CUCGaGCUGcgGGUc -3'
miRNA:   3'- aGCCCGCGa-----CGCuGGGC-CGACa-CCGc -5'
6579 3' -64.1 NC_001847.1 + 54898 0.66 0.539597
Target:  5'- gCGGcaCGCcGuCGACCCGGCaacGUGGCc -3'
miRNA:   3'- aGCCc-GCGaC-GCUGGGCCGa--CACCGc -5'
6579 3' -64.1 NC_001847.1 + 55731 0.66 0.539597
Target:  5'- cUCGGGCGCcacgGUGGUCCGGCUc--GCGc -3'
miRNA:   3'- -AGCCCGCGa---CGCUGGGCCGAcacCGC- -5'
6579 3' -64.1 NC_001847.1 + 105229 0.66 0.539597
Target:  5'- gCGGGCGC-GCGGgCacaGGCg--GGCGc -3'
miRNA:   3'- aGCCCGCGaCGCUgGg--CCGacaCCGC- -5'
6579 3' -64.1 NC_001847.1 + 15396 0.66 0.539597
Target:  5'- gUCGGG-GCUGgGGCCgGGUUucGGCu -3'
miRNA:   3'- -AGCCCgCGACgCUGGgCCGAcaCCGc -5'
6579 3' -64.1 NC_001847.1 + 119576 0.66 0.539597
Target:  5'- gCGGGCaGCgGCGGCCgCGGCccgacGGCc -3'
miRNA:   3'- aGCCCG-CGaCGCUGG-GCCGaca--CCGc -5'
6579 3' -64.1 NC_001847.1 + 7739 0.66 0.53865
Target:  5'- gCGGGCGCggaggcgGCGGCCagggcaagcccgaCGGCcGUuGGUGc -3'
miRNA:   3'- aGCCCGCGa------CGCUGG-------------GCCGaCA-CCGC- -5'
6579 3' -64.1 NC_001847.1 + 80817 0.66 0.531091
Target:  5'- cCGGGCGCgUGaGGCgCCGGauagcgaggccgacaUGUGGUGg -3'
miRNA:   3'- aGCCCGCG-ACgCUG-GGCCg--------------ACACCGC- -5'
6579 3' -64.1 NC_001847.1 + 133321 0.66 0.530149
Target:  5'- aCGGGCGCgccggacgugaGCGcGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- aGCCCGCGa----------CGC-UGGGCCGaca---CCGC- -5'
6579 3' -64.1 NC_001847.1 + 21871 0.66 0.530149
Target:  5'- gCGGGgGCUGCGGCgC-GCUGccgaGGCc -3'
miRNA:   3'- aGCCCgCGACGCUGgGcCGACa---CCGc -5'
6579 3' -64.1 NC_001847.1 + 33629 0.66 0.530149
Target:  5'- aCGGGCGCgGCGGCUgaccgcgaggcgCGcGCgcgcGUGGCc -3'
miRNA:   3'- aGCCCGCGaCGCUGG------------GC-CGa---CACCGc -5'
6579 3' -64.1 NC_001847.1 + 27294 0.66 0.530149
Target:  5'- cCGGGCGagaggacgGCgGugCCGGCg--GGCGu -3'
miRNA:   3'- aGCCCGCga------CG-CugGGCCGacaCCGC- -5'
6579 3' -64.1 NC_001847.1 + 33518 0.66 0.530149
Target:  5'- gCGGGCGCcgccGCGgaggcGCCgGGCgcgGGCGc -3'
miRNA:   3'- aGCCCGCGa---CGC-----UGGgCCGacaCCGC- -5'
6579 3' -64.1 NC_001847.1 + 73729 0.66 0.530149
Target:  5'- gCGGGCGUcGaGGgCCGGCUGgaggagGGCc -3'
miRNA:   3'- aGCCCGCGaCgCUgGGCCGACa-----CCGc -5'
6579 3' -64.1 NC_001847.1 + 132552 0.66 0.530149
Target:  5'- gCGGGCucGCgUGCGGCCgCGGCggccgcgcaGGCGc -3'
miRNA:   3'- aGCCCG--CG-ACGCUGG-GCCGaca------CCGC- -5'
6579 3' -64.1 NC_001847.1 + 30508 0.66 0.530149
Target:  5'- aCGGGCGCgccggacgugaGCGcGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- aGCCCGCGa----------CGC-UGGGCCGaca---CCGC- -5'
6579 3' -64.1 NC_001847.1 + 42339 0.66 0.530149
Target:  5'- gUGGGCGCccgUGUGGCgCGGC---GGCGa -3'
miRNA:   3'- aGCCCGCG---ACGCUGgGCCGacaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.