miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6579 5' -56.4 NC_001847.1 + 95940 0.65 0.889159
Target:  5'- -cCGGCGCCGgaacgcuggcgggCGAGCgUGAGCGCa-- -3'
miRNA:   3'- gaGCUGCGGCa------------GUUCG-ACUUGCGgga -5'
6579 5' -56.4 NC_001847.1 + 27467 0.66 0.885033
Target:  5'- --aGGCGCCGUCAcuGaCUGcACGCCg- -3'
miRNA:   3'- gagCUGCGGCAGUu-C-GACuUGCGGga -5'
6579 5' -56.4 NC_001847.1 + 83364 0.66 0.885033
Target:  5'- --gGACGCgCGgggCGAGCUG-GCGCCg- -3'
miRNA:   3'- gagCUGCG-GCa--GUUCGACuUGCGGga -5'
6579 5' -56.4 NC_001847.1 + 78852 0.66 0.885033
Target:  5'- -gCGACGCCG-CAgacugcuuccAGCUG-GCGCCg- -3'
miRNA:   3'- gaGCUGCGGCaGU----------UCGACuUGCGGga -5'
6579 5' -56.4 NC_001847.1 + 73818 0.66 0.885033
Target:  5'- gUCGccGCGCUG-CAgcGGCUGcGCGUCCUg -3'
miRNA:   3'- gAGC--UGCGGCaGU--UCGACuUGCGGGA- -5'
6579 5' -56.4 NC_001847.1 + 108445 0.66 0.885033
Target:  5'- gUgGACGCCGagCugcGGCUGGA-GCCCg -3'
miRNA:   3'- gAgCUGCGGCa-Gu--UCGACUUgCGGGa -5'
6579 5' -56.4 NC_001847.1 + 111665 0.66 0.885033
Target:  5'- -gCGACGCgCGcCGAGCgcGAugGCCg- -3'
miRNA:   3'- gaGCUGCG-GCaGUUCGa-CUugCGGga -5'
6579 5' -56.4 NC_001847.1 + 113183 0.66 0.885033
Target:  5'- -cCGGCGCCG-C-GGCccAGCGCCCg -3'
miRNA:   3'- gaGCUGCGGCaGuUCGacUUGCGGGa -5'
6579 5' -56.4 NC_001847.1 + 2531 0.66 0.880826
Target:  5'- cCUCGGacccggcggcgcuccCGCCGcCGGGCcgGGGCGgCCCUc -3'
miRNA:   3'- -GAGCU---------------GCGGCaGUUCGa-CUUGC-GGGA- -5'
6579 5' -56.4 NC_001847.1 + 105344 0.66 0.880826
Target:  5'- cCUCGGacccggcggcgcuccCGCCGcCGGGCcgGGGCGgCCCUc -3'
miRNA:   3'- -GAGCU---------------GCGGCaGUUCGa-CUUGC-GGGA- -5'
6579 5' -56.4 NC_001847.1 + 128167 0.66 0.877976
Target:  5'- ---cACGCCGgCAAGCUGAugGCa-- -3'
miRNA:   3'- gagcUGCGGCaGUUCGACUugCGgga -5'
6579 5' -56.4 NC_001847.1 + 65740 0.66 0.877976
Target:  5'- -gCGGCGCUcgaGAGCgUGGugGCCCg -3'
miRNA:   3'- gaGCUGCGGcagUUCG-ACUugCGGGa -5'
6579 5' -56.4 NC_001847.1 + 134576 0.66 0.877976
Target:  5'- -cCGGCGCCGgagacgCGGcGCUG-GCGUCCg -3'
miRNA:   3'- gaGCUGCGGCa-----GUU-CGACuUGCGGGa -5'
6579 5' -56.4 NC_001847.1 + 92383 0.66 0.877976
Target:  5'- gCUCGGaagGCCGUCcuggaucuGCUGucCGCCCc -3'
miRNA:   3'- -GAGCUg--CGGCAGuu------CGACuuGCGGGa -5'
6579 5' -56.4 NC_001847.1 + 85540 0.66 0.877976
Target:  5'- -gUGGCGCgCGcCGAGCUcccgcuGCGCCCa -3'
miRNA:   3'- gaGCUGCG-GCaGUUCGAcu----UGCGGGa -5'
6579 5' -56.4 NC_001847.1 + 35799 0.66 0.877976
Target:  5'- aUCGACGaCCG-CGGGCccaUGGA-GCCCUu -3'
miRNA:   3'- gAGCUGC-GGCaGUUCG---ACUUgCGGGA- -5'
6579 5' -56.4 NC_001847.1 + 102988 0.66 0.877976
Target:  5'- -gCGcACGCCGUCGcggcgugcgcgGGCgcgGcGGCGCCCa -3'
miRNA:   3'- gaGC-UGCGGCAGU-----------UCGa--C-UUGCGGGa -5'
6579 5' -56.4 NC_001847.1 + 25354 0.66 0.877976
Target:  5'- ---cACGCCGgCAAGCUGAugGCa-- -3'
miRNA:   3'- gagcUGCGGCaGUUCGACUugCGgga -5'
6579 5' -56.4 NC_001847.1 + 126488 0.66 0.877976
Target:  5'- uCUUGcGCGCCaUCGu-CUGGGCGCCCg -3'
miRNA:   3'- -GAGC-UGCGGcAGUucGACUUGCGGGa -5'
6579 5' -56.4 NC_001847.1 + 122968 0.66 0.877976
Target:  5'- gUCGGCGCUGUC--GCUGcuauCGCCg- -3'
miRNA:   3'- gAGCUGCGGCAGuuCGACuu--GCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.