Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 16624 | 0.66 | 0.711837 |
|
Target: 5'- --gCAGGAUUACAAGCcCCgaaagCUaaaGCGg -3' miRNA: 3'- ggaGUCCUAAUGUUCGaGGa----GGg--CGC- -5' |
|||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 3901 | 0.66 | 0.666762 |
|
Target: 5'- gCUCAGGAaaGCaAAGUcagUCacaaUCCCGCGg -3' miRNA: 3'- gGAGUCCUaaUG-UUCG---AGg---AGGGCGC- -5' |
|||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 2269 | 0.67 | 0.632544 |
|
Target: 5'- cUCUCGGGuuccauggGCucuGCUCCUgCCGCc -3' miRNA: 3'- -GGAGUCCuaa-----UGuu-CGAGGAgGGCGc -5' |
|||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 25463 | 0.67 | 0.598321 |
|
Target: 5'- cCUUCAGG-UUGC--GCUCCUCCagGCa -3' miRNA: 3'- -GGAGUCCuAAUGuuCGAGGAGGg-CGc -5' |
|||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 11314 | 0.69 | 0.498282 |
|
Target: 5'- gCUCAGGAgaggGC--GCUCCUagCCGCGc -3' miRNA: 3'- gGAGUCCUaa--UGuuCGAGGAg-GGCGC- -5' |
|||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 13242 | 0.7 | 0.425912 |
|
Target: 5'- gUUCAGGGUUGCcuccAGGCugcccgugUCCUCCUGCc -3' miRNA: 3'- gGAGUCCUAAUG----UUCG--------AGGAGGGCGc -5' |
|||||||
| 658 | 3' | -53.7 | AC_000017.1 | + | 33823 | 1.1 | 0.000721 |
|
Target: 5'- uCCUCAGGAUUACAAGCUCCUCCCGCGu -3' miRNA: 3'- -GGAGUCCUAAUGUUCGAGGAGGGCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home