miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 3' -55.7 NC_001847.1 + 35772 0.66 0.875505
Target:  5'- cAGUGugUGCuaggcugGGUCGcAGGGGCCa -3'
miRNA:   3'- cUCGCugACGca-----CUAGCuUCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 50144 0.67 0.868111
Target:  5'- uGGCGGCggacacggccGUGUcGAUCGAGGcGGCCa -3'
miRNA:   3'- cUCGCUGa---------CGCA-CUAGCUUCuCCGGc -5'
6585 3' -55.7 NC_001847.1 + 118754 0.67 0.868111
Target:  5'- -cGCGGCUGCGcGAgcgggCGAAcaugcaaGGGCCGa -3'
miRNA:   3'- cuCGCUGACGCaCUa----GCUUc------UCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 42731 0.67 0.868111
Target:  5'- cGGGCGGCcGCGcGggCGgcGGGGCgGa -3'
miRNA:   3'- -CUCGCUGaCGCaCuaGCuuCUCCGgC- -5'
6585 3' -55.7 NC_001847.1 + 12042 0.67 0.86357
Target:  5'- gGAGCGcuggacgcccugcgcGCUGCG-GA-CGccGAGGCCGc -3'
miRNA:   3'- -CUCGC---------------UGACGCaCUaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 50550 0.67 0.86357
Target:  5'- cAGCGGCgcugcuggaccgcgGCGUcgccucugacGA-CGAGGAGGCCGu -3'
miRNA:   3'- cUCGCUGa-------------CGCA----------CUaGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 33335 0.67 0.8605
Target:  5'- cGGCGcGCUGCGUGA-CGGu-GGGCCc -3'
miRNA:   3'- cUCGC-UGACGCACUaGCUucUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 73237 0.67 0.8605
Target:  5'- gGGGCGGCgGCGcggGcgCGcucGAGGCCGu -3'
miRNA:   3'- -CUCGCUGaCGCa--CuaGCuu-CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 52132 0.67 0.8605
Target:  5'- cGGCGGCgccccaGCG-GAcCGAcGAGGCCGu -3'
miRNA:   3'- cUCGCUGa-----CGCaCUaGCUuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 59361 0.67 0.8605
Target:  5'- gGAGCGGCgGCGgcagCGgcGGcGGCCGg -3'
miRNA:   3'- -CUCGCUGaCGCacuaGCuuCU-CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 12376 0.67 0.85268
Target:  5'- cGGCGGCUGCGgccUCGggGcgcguguGGUCGg -3'
miRNA:   3'- cUCGCUGACGCacuAGCuuCu------CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 43457 0.67 0.85268
Target:  5'- gGGGCGACgGCGcGGUCGccGAGcGCgCGa -3'
miRNA:   3'- -CUCGCUGaCGCaCUAGCuuCUC-CG-GC- -5'
6585 3' -55.7 NC_001847.1 + 33907 0.67 0.836435
Target:  5'- cGGGCcaGGCUGC----UCGggGAGGCUGg -3'
miRNA:   3'- -CUCG--CUGACGcacuAGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 106336 0.68 0.828025
Target:  5'- -cGCGcCUGCGUGAaCGgcGAcggcgucccGGCCGa -3'
miRNA:   3'- cuCGCuGACGCACUaGCuuCU---------CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 14652 0.68 0.810669
Target:  5'- cGAGCGgcGCUGaCGUGAacaUCGAcGGcgcGGCCGg -3'
miRNA:   3'- -CUCGC--UGAC-GCACU---AGCUuCU---CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 84608 0.68 0.810669
Target:  5'- cAGCGccGCUGCGUcgccuUCGAGcGGGGCCa -3'
miRNA:   3'- cUCGC--UGACGCAcu---AGCUU-CUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 119882 0.68 0.810669
Target:  5'- -uGCGGCUGCGgcGAUCGcgugcGuGGCCGc -3'
miRNA:   3'- cuCGCUGACGCa-CUAGCuu---CuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 125557 0.68 0.810669
Target:  5'- -cGCGGCUGCGgcucGAUCGc---GGCCGc -3'
miRNA:   3'- cuCGCUGACGCa---CUAGCuucuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 11964 0.68 0.810669
Target:  5'- aGAGCGACUcgagGCGUGccGUUGGcGGGGGCUc -3'
miRNA:   3'- -CUCGCUGA----CGCAC--UAGCU-UCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 12476 0.68 0.801739
Target:  5'- -cGCGGCUucccGCGUGGcggCGggGGcGGCCa -3'
miRNA:   3'- cuCGCUGA----CGCACUa--GCuuCU-CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.