miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 5' -58.8 NC_001847.1 + 46854 0.66 0.75684
Target:  5'- -gCGAGcCGCGUCgGCCcagcagGCGAaGCGCUc -3'
miRNA:   3'- caGCUC-GCGCAGaUGG------CGCU-CGCGAu -5'
6585 5' -58.8 NC_001847.1 + 79796 0.66 0.75684
Target:  5'- -cCGcGGCGCGUUcagcaccGCCGCGAGCGg-- -3'
miRNA:   3'- caGC-UCGCGCAGa------UGGCGCUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 31300 0.66 0.75684
Target:  5'- -gCGGGCGCGgggagcgggcUCUGCUGCGuguuuucGCGCg- -3'
miRNA:   3'- caGCUCGCGC----------AGAUGGCGCu------CGCGau -5'
6585 5' -58.8 NC_001847.1 + 16669 0.66 0.753975
Target:  5'- -gCGGGCGCGUCgcgcagccuugGCUGCGcgggcgagccggcaGGCGCa- -3'
miRNA:   3'- caGCUCGCGCAGa----------UGGCGC--------------UCGCGau -5'
6585 5' -58.8 NC_001847.1 + 55486 0.66 0.753975
Target:  5'- aUCGuGGCGCGgCUccggcagugguucgGCgGCGAGCGCg- -3'
miRNA:   3'- cAGC-UCGCGCaGA--------------UGgCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 59594 0.66 0.747253
Target:  5'- -gCGuGCGCGUCcgcCCGCGAcgggaaGCGCa- -3'
miRNA:   3'- caGCuCGCGCAGau-GGCGCU------CGCGau -5'
6585 5' -58.8 NC_001847.1 + 14562 0.66 0.747253
Target:  5'- -cCGcAGCGCGggUGCUgGCGGGCGCg- -3'
miRNA:   3'- caGC-UCGCGCagAUGG-CGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 68273 0.66 0.747253
Target:  5'- gGUUGGGCGCGUacacgaagcCCGaGAGCGCg- -3'
miRNA:   3'- -CAGCUCGCGCAgau------GGCgCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 79238 0.66 0.747253
Target:  5'- -aCGGGCGCG-CUcCC-CGAGCuGCUAg -3'
miRNA:   3'- caGCUCGCGCaGAuGGcGCUCG-CGAU- -5'
6585 5' -58.8 NC_001847.1 + 43543 0.66 0.747253
Target:  5'- -gCGAGgagaaGCG-CcGCCGCGAGCGCc- -3'
miRNA:   3'- caGCUCg----CGCaGaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 102695 0.66 0.747253
Target:  5'- -gCGGGCGUGUgCUGCgGC-AGCGCc- -3'
miRNA:   3'- caGCUCGCGCA-GAUGgCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 5066 0.66 0.747253
Target:  5'- gGUCGGGCGCGgcccaggACgGCGAcGCGUc- -3'
miRNA:   3'- -CAGCUCGCGCaga----UGgCGCU-CGCGau -5'
6585 5' -58.8 NC_001847.1 + 92685 0.66 0.747253
Target:  5'- --gGGGCGCGgaacgcacccUCUGCCcaCGAGCGCg- -3'
miRNA:   3'- cagCUCGCGC----------AGAUGGc-GCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 75527 0.66 0.744357
Target:  5'- -gCGGGCgGCGUCUGCauugcgcuucccguCGCGGGCGg-- -3'
miRNA:   3'- caGCUCG-CGCAGAUG--------------GCGCUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 45766 0.66 0.737566
Target:  5'- -aCGuGCGCGUCUaagucAUCGCGcacGGCGCc- -3'
miRNA:   3'- caGCuCGCGCAGA-----UGGCGC---UCGCGau -5'
6585 5' -58.8 NC_001847.1 + 5200 0.66 0.737566
Target:  5'- -gCGAGCGCGgcaagCgcGCCGCGAcggaagcuGCGCa- -3'
miRNA:   3'- caGCUCGCGCa----Ga-UGGCGCU--------CGCGau -5'
6585 5' -58.8 NC_001847.1 + 2120 0.66 0.737566
Target:  5'- cGUCGgccgaggccAGUGCGUCUACCagGUuuGCGCUGc -3'
miRNA:   3'- -CAGC---------UCGCGCAGAUGG--CGcuCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 123225 0.66 0.737566
Target:  5'- --aGGGCGCcuagaaaGCCGCGGGCGCg- -3'
miRNA:   3'- cagCUCGCGcaga---UGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 105668 0.66 0.737566
Target:  5'- --aGAGCGUGcCgccucgGCCGCGGGCGg-- -3'
miRNA:   3'- cagCUCGCGCaGa-----UGGCGCUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 119672 0.66 0.737566
Target:  5'- --aGuAGCGCGUCUGCgCGCcGuGCGCc- -3'
miRNA:   3'- cagC-UCGCGCAGAUG-GCG-CuCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.