miRNA display CGI


Results 21 - 40 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 3' -59.5 NC_001847.1 + 23887 0.66 0.68688
Target:  5'- cAGCGCGCGCAucaGCGGCaGguucGGGCGc -3'
miRNA:   3'- aUCGUGCGUGUcg-CGCUG-Ca---CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 11368 0.66 0.68688
Target:  5'- cGGC-CGCGCGGCGCGAUcaacuacGGGaCGAc -3'
miRNA:   3'- aUCGuGCGUGUCGCGCUGca-----CCC-GUU- -5'
6589 3' -59.5 NC_001847.1 + 17376 0.66 0.68688
Target:  5'- cAGCggGCGCGCGGUGCGuCGUGacGGUc- -3'
miRNA:   3'- aUCG--UGCGUGUCGCGCuGCAC--CCGuu -5'
6589 3' -59.5 NC_001847.1 + 30483 0.66 0.68688
Target:  5'- cUGGgACGCGauCGGCGCGGCccucGGGCGc -3'
miRNA:   3'- -AUCgUGCGU--GUCGCGCUGca--CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 85125 0.66 0.68688
Target:  5'- cGGCGCGCcCGGgGCccagcaGGCGgUGGGCGc -3'
miRNA:   3'- aUCGUGCGuGUCgCG------CUGC-ACCCGUu -5'
6589 3' -59.5 NC_001847.1 + 99449 0.66 0.68586
Target:  5'- cAGCGugggaguUGCGCAGCGCGcCGcucgGGGCc- -3'
miRNA:   3'- aUCGU-------GCGUGUCGCGCuGCa---CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 4386 0.66 0.676656
Target:  5'- gAGCGCGCGCGcCGCGGCccaGGCGc -3'
miRNA:   3'- aUCGUGCGUGUcGCGCUGcacCCGUu -5'
6589 3' -59.5 NC_001847.1 + 113592 0.66 0.676656
Target:  5'- aGGCucACGCACA-CGCGAUGUgccagcuuGGGCGc -3'
miRNA:   3'- aUCG--UGCGUGUcGCGCUGCA--------CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 128790 0.66 0.676656
Target:  5'- cGGCuACGCccGCGGCGCGGuugcCGccgGGGCAc -3'
miRNA:   3'- aUCG-UGCG--UGUCGCGCU----GCa--CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 107199 0.66 0.676655
Target:  5'- gAGCGCGCGCGcCGCGGCccaGGCGc -3'
miRNA:   3'- aUCGUGCGUGUcGCGCUGcacCCGUu -5'
6589 3' -59.5 NC_001847.1 + 59544 0.66 0.676655
Target:  5'- aUGGCAgGCGgugGGgGCGGCGgGGGCGGu -3'
miRNA:   3'- -AUCGUgCGUg--UCgCGCUGCaCCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 34401 0.66 0.676655
Target:  5'- -cGC-CGCgGCAGaCGCGGCGcuggGGGCGg -3'
miRNA:   3'- auCGuGCG-UGUC-GCGCUGCa---CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 33486 0.66 0.676655
Target:  5'- aGGCgAUGUccGCGGCgGCGGCGcGGGCGg -3'
miRNA:   3'- aUCG-UGCG--UGUCG-CGCUGCaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 8110 0.66 0.676655
Target:  5'- cGGCGCcaGCGCAgGCGCGGgGccccagGGGCGGg -3'
miRNA:   3'- aUCGUG--CGUGU-CGCGCUgCa-----CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 37582 0.66 0.676655
Target:  5'- cUGGC-CGCuGCGGCuGCGGCGgccggGGGCc- -3'
miRNA:   3'- -AUCGuGCG-UGUCG-CGCUGCa----CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 61963 0.66 0.675631
Target:  5'- -cGCGCGCcgugcccgcCGGCGCGGCGggcauaaUGGGCc- -3'
miRNA:   3'- auCGUGCGu--------GUCGCGCUGC-------ACCCGuu -5'
6589 3' -59.5 NC_001847.1 + 78424 0.66 0.675631
Target:  5'- -uGCugGCGCGcGCGCuGACGgaggagcUGGGCu- -3'
miRNA:   3'- auCGugCGUGU-CGCG-CUGC-------ACCCGuu -5'
6589 3' -59.5 NC_001847.1 + 48607 0.66 0.675631
Target:  5'- gGGCGCGCGCucggccguGCcgaugugaacgccGCGGCGgcgGGGCGc -3'
miRNA:   3'- aUCGUGCGUGu-------CG-------------CGCUGCa--CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 22152 0.66 0.672555
Target:  5'- cGGCGCGCAaaagcCGGCGCaGCGggccggccugcucGGGCGAg -3'
miRNA:   3'- aUCGUGCGU-----GUCGCGcUGCa------------CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 124965 0.66 0.672555
Target:  5'- cGGCGCGCAaaagcCGGCGCaGCGggccggccugcucGGGCGAg -3'
miRNA:   3'- aUCGUGCGU-----GUCGCGcUGCa------------CCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.