Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6589 | 5' | -59.6 | NC_001847.1 | + | 16904 | 0.66 | 0.769214 |
Target: 5'- uCGcCGGUCUCg-CG-CGGGCGgGAGu -3' miRNA: 3'- -GCaGCCGGAGaaGCaGCCCGCgCUCc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 61436 | 0.66 | 0.769214 |
Target: 5'- cCG-CGGCCgCgcCGcCGGGCgcgGCGAGGc -3' miRNA: 3'- -GCaGCCGGaGaaGCaGCCCG---CGCUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 116273 | 0.66 | 0.769214 |
Target: 5'- -cUCGGCCUCUaCG-CuGGC-CGAGGc -3' miRNA: 3'- gcAGCCGGAGAaGCaGcCCGcGCUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 104420 | 0.66 | 0.769214 |
Target: 5'- aGUCGGCCacgUCcgCG-CGGGCGuCcAGGa -3' miRNA: 3'- gCAGCCGG---AGaaGCaGCCCGC-GcUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 30416 | 0.66 | 0.760075 |
Target: 5'- cCGcCGGCaagC-UCGUggCGGGCGCgGAGGc -3' miRNA: 3'- -GCaGCCGga-GaAGCA--GCCCGCG-CUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 18388 | 0.66 | 0.760075 |
Target: 5'- -cUCGGCgUCcUCGcccugCGGGCccGCGGGGc -3' miRNA: 3'- gcAGCCGgAGaAGCa----GCCCG--CGCUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 49460 | 0.66 | 0.760075 |
Target: 5'- gGUCGGCgUCUUCGcCGGccugGCGCu--- -3' miRNA: 3'- gCAGCCGgAGAAGCaGCC----CGCGcucc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 59883 | 0.66 | 0.760075 |
Target: 5'- gCG-CGGCCUCcgCGUUGG-CGagGAGGg -3' miRNA: 3'- -GCaGCCGGAGaaGCAGCCcGCg-CUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 90073 | 0.66 | 0.757312 |
Target: 5'- gGUCGGCCaacaaauacuggcUCUgggacgccaccgCGggGGGCGCuGAGGg -3' miRNA: 3'- gCAGCCGG-------------AGAa-----------GCagCCCGCG-CUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 92490 | 0.66 | 0.75083 |
Target: 5'- gCGgCGGCCUCUUCGacaaaGGGCaCGAc- -3' miRNA: 3'- -GCaGCCGGAGAAGCag---CCCGcGCUcc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 77426 | 0.66 | 0.75083 |
Target: 5'- gCGagGGCUUCgUCGUCGuGGCGUacGAGc -3' miRNA: 3'- -GCagCCGGAGaAGCAGC-CCGCG--CUCc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 22867 | 0.66 | 0.75083 |
Target: 5'- aCG-CGGCCgugugcacggCUUCGUCGcGGCuGaUGAGGu -3' miRNA: 3'- -GCaGCCGGa---------GAAGCAGC-CCG-C-GCUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 74152 | 0.67 | 0.741488 |
Target: 5'- uGgCGGCCUCgaCGgcgccgUGGGCGCGcgcagcGGGg -3' miRNA: 3'- gCaGCCGGAGaaGCa-----GCCCGCGC------UCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 81494 | 0.67 | 0.741488 |
Target: 5'- aG-CGGCCcgggugcccggUCUUUGUCGcGGaCGCGAGu -3' miRNA: 3'- gCaGCCGG-----------AGAAGCAGC-CC-GCGCUCc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 29696 | 0.67 | 0.732057 |
Target: 5'- --aUGGCgCUgaUCGcUUGGGCGCGAGa -3' miRNA: 3'- gcaGCCG-GAgaAGC-AGCCCGCGCUCc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 42730 | 0.67 | 0.722546 |
Target: 5'- gCGggCGGCCg---CG-CGGGCGgCGGGGc -3' miRNA: 3'- -GCa-GCCGGagaaGCaGCCCGC-GCUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 56383 | 0.67 | 0.722546 |
Target: 5'- -cUCGGCgCUCgggUCGgggaggUCGgccGGCGCGGGGa -3' miRNA: 3'- gcAGCCG-GAGa--AGC------AGC---CCGCGCUCC- -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 123834 | 0.67 | 0.722546 |
Target: 5'- cCGcCGGCCUCgg---CGGGCGCGc-- -3' miRNA: 3'- -GCaGCCGGAGaagcaGCCCGCGCucc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 120597 | 0.67 | 0.712962 |
Target: 5'- gCGUCGGCaUCUacggCGgcaccgCGGGCaGCGAGc -3' miRNA: 3'- -GCAGCCGgAGAa---GCa-----GCCCG-CGCUCc -5' |
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6589 | 5' | -59.6 | NC_001847.1 | + | 83251 | 0.67 | 0.712962 |
Target: 5'- gCGgCGGCCgaaagcgCggCGggggCGGGCGCaGAGGc -3' miRNA: 3'- -GCaGCCGGa------GaaGCa---GCCCGCG-CUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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