miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 3' -50.8 NC_001847.1 + 89558 0.66 0.992465
Target:  5'- cGUGAuCGUCGcgCCcggcgaggGCGUggaGCGCGACGc -3'
miRNA:   3'- cCACUuGCAGCa-GG--------UGCA---UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 45567 0.66 0.992465
Target:  5'- cGGc-GGCGUCGcgcUCCACGcccucgccggGCGCGACGa -3'
miRNA:   3'- -CCacUUGCAGC---AGGUGCa---------UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 30587 0.66 0.992465
Target:  5'- cGGUGGaguaccucuGCGcgCGgcuggCCGCG-GCGCGGCGg -3'
miRNA:   3'- -CCACU---------UGCa-GCa----GGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 98553 0.66 0.992253
Target:  5'- cGGUagcaGAGCGgcgugccgucggCGUCCAgGUaggcGCGCGGCGc -3'
miRNA:   3'- -CCA----CUUGCa-----------GCAGGUgCA----UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 101562 0.67 0.991358
Target:  5'- --aGGACGUCGUCgGCaccGCGCA-CGg -3'
miRNA:   3'- ccaCUUGCAGCAGgUGca-UGCGUuGC- -5'
6592 3' -50.8 NC_001847.1 + 84542 0.67 0.991358
Target:  5'- cGGcGAAgG-CGcCCGCGU-CGCAGCGc -3'
miRNA:   3'- -CCaCUUgCaGCaGGUGCAuGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 39809 0.67 0.991358
Target:  5'- --cGAccGCGUCGUCCGCGgcgggcccgaGCGCuuccuGCGu -3'
miRNA:   3'- ccaCU--UGCAGCAGGUGCa---------UGCGu----UGC- -5'
6592 3' -50.8 NC_001847.1 + 31216 0.67 0.991002
Target:  5'- uGGUGcuggaggccgcggcGGCGcCGcCCGCGgcCGCGGCGc -3'
miRNA:   3'- -CCAC--------------UUGCaGCaGGUGCauGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 134029 0.67 0.991002
Target:  5'- uGGUGcuggaggccgcggcGGCGcCGcCCGCGgcCGCGGCGc -3'
miRNA:   3'- -CCAC--------------UUGCaGCaGGUGCauGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 96671 0.67 0.990126
Target:  5'- gGGUacGCGUCGUgCGCGgggGC-CGGCGg -3'
miRNA:   3'- -CCAcuUGCAGCAgGUGCa--UGcGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 18425 0.67 0.990126
Target:  5'- --aGGGCcUUGgCCACGUGCGCcGCGg -3'
miRNA:   3'- ccaCUUGcAGCaGGUGCAUGCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 25344 0.67 0.990126
Target:  5'- ----cGCaUCGUCCACGUG-GCGGCGg -3'
miRNA:   3'- ccacuUGcAGCAGGUGCAUgCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 85989 0.67 0.990126
Target:  5'- cGUGAcCGUgGUCCGCGcGC-CGAUGg -3'
miRNA:   3'- cCACUuGCAgCAGGUGCaUGcGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 96644 0.67 0.990126
Target:  5'- gGGUacGCGUCGUgCGCGgggGC-CGGCGg -3'
miRNA:   3'- -CCAcuUGCAGCAgGUGCa--UGcGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 71913 0.67 0.988761
Target:  5'- cGUGcGCGcCGUCCAgGUagauACGCAcgacGCGg -3'
miRNA:   3'- cCACuUGCaGCAGGUgCA----UGCGU----UGC- -5'
6592 3' -50.8 NC_001847.1 + 69948 0.67 0.988761
Target:  5'- --cGcACGUuggCGUCCGCGgGCGCGACc -3'
miRNA:   3'- ccaCuUGCA---GCAGGUGCaUGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 63373 0.67 0.988761
Target:  5'- uGUGuAC-UCGUCCACGagccgcCGCAGCGc -3'
miRNA:   3'- cCACuUGcAGCAGGUGCau----GCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 4592 0.67 0.988761
Target:  5'- cGGUGcGCGgcgacgaaggCGgCCACGUcguCGCAGCGc -3'
miRNA:   3'- -CCACuUGCa---------GCaGGUGCAu--GCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 9523 0.67 0.988175
Target:  5'- --cGAGCGggcggcgcgcuagCGUCCguGCGUGCGcCAGCGc -3'
miRNA:   3'- ccaCUUGCa------------GCAGG--UGCAUGC-GUUGC- -5'
6592 3' -50.8 NC_001847.1 + 54524 0.67 0.987253
Target:  5'- cGGUGgGGCGgggcCGUCCGgGgGCGCAgACGg -3'
miRNA:   3'- -CCAC-UUGCa---GCAGGUgCaUGCGU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.