miRNA display CGI

Results 21 - 40 of 1679 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6592	5'	-68.8	NC_001847.1	+	81159	0.66	0.368887
	Target:  5'- -aCGCGGCGcCGgGCGGaagacGUGgUGCGCg -3' miRNA:   3'- agGCGCCGC-GCgCGCC-----CGCgGCGCGg -5'
6592	5'	-68.8	NC_001847.1	+	82718	0.66	0.368887
	Target:  5'- gUCCaUGuGCuccaCGCGCGGGC-CCaGCGCCu -3' miRNA:   3'- -AGGcGC-CGc---GCGCGCCCGcGG-CGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	110001	0.66	0.368887
	Target:  5'- aUCCGCuucggcuuuaGGCaGC-CGCGGcCGCCGC-CCg -3' miRNA:   3'- -AGGCG----------CCG-CGcGCGCCcGCGGCGcGG- -5'
6592	5'	-68.8	NC_001847.1	+	88589	0.66	0.368887
	Target:  5'- -aCGCGacguucgaCGUGgGCGGGCGC-GCGCUc -3' miRNA:   3'- agGCGCc-------GCGCgCGCCCGCGgCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	123791	0.66	0.368887
	Target:  5'- -gCGCGGC-CGCGCGuacgaGUGCUcccgcuccgGCGCCa -3' miRNA:   3'- agGCGCCGcGCGCGCc----CGCGG---------CGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	30521	0.66	0.368887
	Target:  5'- -aCGUGaGCGCGCuCGGcGCGCagggCGUGCUg -3' miRNA:   3'- agGCGC-CGCGCGcGCC-CGCG----GCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	8481	0.66	0.368887
	Target:  5'- --gGCGGCGCucgGC-CGGGgGCgGgGCCc -3' miRNA:   3'- aggCGCCGCG---CGcGCCCgCGgCgCGG- -5'
6592	5'	-68.8	NC_001847.1	+	129241	0.66	0.368144
	Target:  5'- cCCG-GGCGCacaaucugcgacgGCGCGGcCGCCcuGCGCg -3' miRNA:   3'- aGGCgCCGCG-------------CGCGCCcGCGG--CGCGg -5'
6592	5'	-68.8	NC_001847.1	+	107606	0.66	0.368144
	Target:  5'- gCCGCcGCGC-CGCcguucucGGGCGuCCcCGCCg -3' miRNA:   3'- aGGCGcCGCGcGCG-------CCCGC-GGcGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	43540	0.66	0.367403
	Target:  5'- gCCGCGaggagaaGCGcCGcCGCGaGCGCCGCgaggaugGCCg -3' miRNA:   3'- aGGCGC-------CGC-GC-GCGCcCGCGGCG-------CGG- -5'
6592	5'	-68.8	NC_001847.1	+	44888	0.66	0.367403
	Target:  5'- gCCGCGugaacgaGCGCGUcacagccGCGgcGGCgGCCGCGaCCg -3' miRNA:   3'- aGGCGC-------CGCGCG-------CGC--CCG-CGGCGC-GG- -5'
6592	5'	-68.8	NC_001847.1	+	44094	0.66	0.366662
	Target:  5'- aCCGCGuGUGCGgccuuuguccgagaCGcCGGGCaGCUGCuccGCCg -3' miRNA:   3'- aGGCGC-CGCGC--------------GC-GCCCG-CGGCG---CGG- -5'
6592	5'	-68.8	NC_001847.1	+	97054	0.66	0.366662
	Target:  5'- gUCCG-GGCugcuuuccccgaccGCG-GCGGcCGCCGCGCg -3' miRNA:   3'- -AGGCgCCG--------------CGCgCGCCcGCGGCGCGg -5'
6592	5'	-68.8	NC_001847.1	+	6844	0.66	0.366662
	Target:  5'- cUCgGCGaGgugcucgagcagcaCGCGCGCGGGUaggGCCuuGCCg -3' miRNA:   3'- -AGgCGC-C--------------GCGCGCGCCCG---CGGcgCGG- -5'
6592	5'	-68.8	NC_001847.1	+	49754	0.66	0.366662
	Target:  5'- uUuuGCGGCGgcguaucauaugaaCGCGCuGGCGaCGCuuGCCa -3' miRNA:   3'- -AggCGCCGC--------------GCGCGcCCGCgGCG--CGG- -5'
6592	5'	-68.8	NC_001847.1	+	128671	0.66	0.364445
	Target:  5'- cCUGCaGGC-CGUGCGGGaCugccuggccacguacGCCGuCGCCg -3' miRNA:   3'- aGGCG-CCGcGCGCGCCC-G---------------CGGC-GCGG- -5'
6592	5'	-68.8	NC_001847.1	+	64681	0.66	0.364445
	Target:  5'- aCCG-GGCGCccGCGCGugucgcagugcgucaGGCGCgGCaccGCCa -3' miRNA:   3'- aGGCgCCGCG--CGCGC---------------CCGCGgCG---CGG- -5'
6592	5'	-68.8	NC_001847.1	+	43486	0.66	0.361505
	Target:  5'- gCCGCaGC-CGCGagagaGGGCgaagcaagaGCCGCaGCCg -3' miRNA:   3'- aGGCGcCGcGCGCg----CCCG---------CGGCG-CGG- -5'
6592	5'	-68.8	NC_001847.1	+	57897	0.66	0.361505
	Target:  5'- cCCGCca-GCGCcCGcGCGaCCGCGCCa -3' miRNA:   3'- aGGCGccgCGCGcGCcCGC-GGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	114690	0.66	0.361505
	Target:  5'- gCCGCGGCcUGC-UGGaCGCCuuccGCGCCg -3' miRNA:   3'- aGGCGCCGcGCGcGCCcGCGG----CGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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