miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6594 3' -49.7 NC_001847.1 + 73263 0.65 0.997217
Target:  5'- ---cCGCUCG-CCG-UGCAAcccccgcGGGCGCu -3'
miRNA:   3'- uaaaGCGAGCaGGCcAUGUU-------UCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 66052 0.66 0.996757
Target:  5'- ---cCGCcCGUCCGcGcGCGGcgccAGACGCg -3'
miRNA:   3'- uaaaGCGaGCAGGC-CaUGUU----UCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 18605 0.66 0.996757
Target:  5'- ---gCGC-CGUCCGcgGCGucGGCGCg -3'
miRNA:   3'- uaaaGCGaGCAGGCcaUGUuuCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 35401 0.66 0.996757
Target:  5'- ---aCGCUCGcuuugCCGGcucgGCcuacGAGGCGCa -3'
miRNA:   3'- uaaaGCGAGCa----GGCCa---UGu---UUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 17799 0.66 0.996757
Target:  5'- -cUUUGCUCGgCCGcGggggGCGAGGcCGCc -3'
miRNA:   3'- uaAAGCGAGCaGGC-Ca---UGUUUCuGCG- -5'
6594 3' -49.7 NC_001847.1 + 115902 0.66 0.996757
Target:  5'- ---cCGCUUGgCCGGcucGCGcAGGCGCu -3'
miRNA:   3'- uaaaGCGAGCaGGCCa--UGUuUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 79536 0.66 0.996757
Target:  5'- --gUCGC-CGUCgGGgcCGGGGGgGCu -3'
miRNA:   3'- uaaAGCGaGCAGgCCauGUUUCUgCG- -5'
6594 3' -49.7 NC_001847.1 + 40383 0.66 0.996702
Target:  5'- ---gCGCUCaccUCgCGGUGCGAAGAguagagcCGCg -3'
miRNA:   3'- uaaaGCGAGc--AG-GCCAUGUUUCU-------GCG- -5'
6594 3' -49.7 NC_001847.1 + 57969 0.66 0.996174
Target:  5'- --gUCGCggCGUCgGGagGCAGGaccGGCGCg -3'
miRNA:   3'- uaaAGCGa-GCAGgCCa-UGUUU---CUGCG- -5'
6594 3' -49.7 NC_001847.1 + 85587 0.66 0.996174
Target:  5'- ---gCGC-CGUCgaCGGgcgcgccgGCAAAGGCGCu -3'
miRNA:   3'- uaaaGCGaGCAG--GCCa-------UGUUUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 19619 0.66 0.996174
Target:  5'- ----aGCUCGggcCCGGggcgccgGCGucGGCGCg -3'
miRNA:   3'- uaaagCGAGCa--GGCCa------UGUuuCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 100869 0.66 0.996174
Target:  5'- ---cCGC-CGggggUCGGcgGCAGGGGCGCg -3'
miRNA:   3'- uaaaGCGaGCa---GGCCa-UGUUUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 18951 0.66 0.996174
Target:  5'- ---cCGCggCGUCCGGgcgGCGAcGACcaGCg -3'
miRNA:   3'- uaaaGCGa-GCAGGCCa--UGUUuCUG--CG- -5'
6594 3' -49.7 NC_001847.1 + 33930 0.66 0.996174
Target:  5'- ----aGCcuUCGgCCGGUACcgcGAGGCGCu -3'
miRNA:   3'- uaaagCG--AGCaGGCCAUGu--UUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 95329 0.66 0.996174
Target:  5'- ---gCGCUCGggcCCGccGCGGAcGACGCg -3'
miRNA:   3'- uaaaGCGAGCa--GGCcaUGUUU-CUGCG- -5'
6594 3' -49.7 NC_001847.1 + 102992 0.66 0.995509
Target:  5'- ---aCGC-CGUCgCGGcgUGCGcGGGCGCg -3'
miRNA:   3'- uaaaGCGaGCAG-GCC--AUGUuUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 41964 0.66 0.995509
Target:  5'- --gUCGCUCGUUgaGUGCGuucGGGGCGUc -3'
miRNA:   3'- uaaAGCGAGCAGgcCAUGU---UUCUGCG- -5'
6594 3' -49.7 NC_001847.1 + 21833 0.66 0.995509
Target:  5'- --gUCGC-CGUCCGaGgcggagaACGAGGACaGCg -3'
miRNA:   3'- uaaAGCGaGCAGGC-Ca------UGUUUCUG-CG- -5'
6594 3' -49.7 NC_001847.1 + 111425 0.66 0.995509
Target:  5'- ---gCGCUCGgCCGGggGCGGGGggaggaGCGCc -3'
miRNA:   3'- uaaaGCGAGCaGGCCa-UGUUUC------UGCG- -5'
6594 3' -49.7 NC_001847.1 + 27877 0.66 0.995509
Target:  5'- ---gCGCUCGagCGGUugGAuGGCGa -3'
miRNA:   3'- uaaaGCGAGCagGCCAugUUuCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.