miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6594 5' -53.7 NC_001847.1 + 57702 0.66 0.952982
Target:  5'- cGGGUG-CCGCGCUCucgaccgugucGGGCAucgccucguuuauuGCGAACc -3'
miRNA:   3'- -CCUACaGGUGCGGG-----------UCCGUu-------------CGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 47140 0.66 0.951312
Target:  5'- cGAUGacgCCGCGCCCcucGGGCccggccGCAAAg -3'
miRNA:   3'- cCUACa--GGUGCGGG---UCCGuu----CGUUUg -5'
6594 5' -53.7 NC_001847.1 + 99199 0.66 0.951312
Target:  5'- ---cG-CCagcaGCGCCCAGGC--GCAAGCg -3'
miRNA:   3'- ccuaCaGG----UGCGGGUCCGuuCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 98020 0.66 0.951312
Target:  5'- uGGgcGUgCGCGcCCCAGaGCAugaacaccAGCGGGCc -3'
miRNA:   3'- -CCuaCAgGUGC-GGGUC-CGU--------UCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 4410 0.66 0.951312
Target:  5'- ---cGUCgACGCCgAcGGC-GGCGAGCg -3'
miRNA:   3'- ccuaCAGgUGCGGgU-CCGuUCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 85998 0.66 0.951312
Target:  5'- ---gGUCCGCGCgCCgauGGGCucgGGCAAGa -3'
miRNA:   3'- ccuaCAGGUGCG-GG---UCCGu--UCGUUUg -5'
6594 5' -53.7 NC_001847.1 + 81573 0.66 0.951312
Target:  5'- ----aUCCAcguCGCCCAGcGC-GGCGAGCg -3'
miRNA:   3'- ccuacAGGU---GCGGGUC-CGuUCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 115438 0.66 0.951312
Target:  5'- ---cGUCaGCGCCCGgcucugcucGGCAAGgAAACg -3'
miRNA:   3'- ccuaCAGgUGCGGGU---------CCGUUCgUUUG- -5'
6594 5' -53.7 NC_001847.1 + 58635 0.66 0.951312
Target:  5'- gGGAcGUaggCCGCGaacacgggcuCCCAGGCGcuGCAGGCg -3'
miRNA:   3'- -CCUaCA---GGUGC----------GGGUCCGUu-CGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 104818 0.66 0.951312
Target:  5'- ---cGUCCAgccCGCcgCCGGGgGGGCGGGCg -3'
miRNA:   3'- ccuaCAGGU---GCG--GGUCCgUUCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 116968 0.66 0.951312
Target:  5'- ---cGUCCGCcauggGCCCgcugGGGCGAGCGuGGCu -3'
miRNA:   3'- ccuaCAGGUG-----CGGG----UCCGUUCGU-UUG- -5'
6594 5' -53.7 NC_001847.1 + 120817 0.66 0.950889
Target:  5'- -----aCCACGCCCGGccccaccGCGAGCAGc- -3'
miRNA:   3'- ccuacaGGUGCGGGUC-------CGUUCGUUug -5'
6594 5' -53.7 NC_001847.1 + 12322 0.66 0.946967
Target:  5'- cGGUGggCGCGCCCGccGGCucgcuGGUGAGCg -3'
miRNA:   3'- cCUACagGUGCGGGU--CCGu----UCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 38973 0.66 0.946967
Target:  5'- cGGcgG-CCGCGgCgGGGCuuAGUAGACg -3'
miRNA:   3'- -CCuaCaGGUGCgGgUCCGu-UCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 131420 0.66 0.946967
Target:  5'- ---cGUgCGCGCCguGGCcGGCGcGCg -3'
miRNA:   3'- ccuaCAgGUGCGGguCCGuUCGUuUG- -5'
6594 5' -53.7 NC_001847.1 + 16770 0.66 0.946967
Target:  5'- cGAUGagaaugCCGCGCCgCAcGGCGgggucaucgGGCAGGCc -3'
miRNA:   3'- cCUACa-----GGUGCGG-GU-CCGU---------UCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 48922 0.66 0.946967
Target:  5'- --cUGUCCAUaGCCU-GGCGGGCGcaGGCg -3'
miRNA:   3'- ccuACAGGUG-CGGGuCCGUUCGU--UUG- -5'
6594 5' -53.7 NC_001847.1 + 33531 0.66 0.946967
Target:  5'- cGGAggcgCCGgGCgCGGGCGccgaagaggcGGCAGACg -3'
miRNA:   3'- -CCUaca-GGUgCGgGUCCGU----------UCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 52050 0.66 0.946967
Target:  5'- cGGAgg-CC-CGCCCGGagguGUggGCGGGCa -3'
miRNA:   3'- -CCUacaGGuGCGGGUC----CGuuCGUUUG- -5'
6594 5' -53.7 NC_001847.1 + 59212 0.66 0.946967
Target:  5'- ---cGUCCGCGCCguGcGCuuGCAcGCg -3'
miRNA:   3'- ccuaCAGGUGCGGguC-CGuuCGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.