miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 3' -54.4 NC_001847.1 + 81390 0.66 0.941619
Target:  5'- gGUGCGCAC--UCGCa----GCUGCCg -3'
miRNA:   3'- gCACGUGUGcaAGUGguaggCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 28795 0.66 0.940679
Target:  5'- gCGUGCagggcugccggggccACAgcuCGUucaUCACCGggagcgugacggcgCCGCUGCCg -3'
miRNA:   3'- -GCACG---------------UGU---GCA---AGUGGUa-------------GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 131608 0.66 0.940679
Target:  5'- gCGUGCagggcugccggggccACAgcuCGUucaUCACCGggagcgugacggcgCCGCUGCCg -3'
miRNA:   3'- -GCACG---------------UGU---GCA---AGUGGUa-------------GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 45588 0.66 0.937311
Target:  5'- gGUGCucACGCGgcccgcgggccaaucUgACCcgUCGCUGCCg -3'
miRNA:   3'- gCACG--UGUGCa--------------AgUGGuaGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 106447 0.66 0.93682
Target:  5'- gCG-GCGCGCGUaCACCAggUCCaccaGC-GCCg -3'
miRNA:   3'- -GCaCGUGUGCAaGUGGU--AGG----CGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 66154 0.66 0.93682
Target:  5'- aCGUGCugGaCGUgcUCucgGCCGUgcCCGCgcggGCCg -3'
miRNA:   3'- -GCACGugU-GCA--AG---UGGUA--GGCGa---CGG- -5'
6598 3' -54.4 NC_001847.1 + 2825 0.66 0.93682
Target:  5'- cCGUGCugAggguugcgaucuCGgggucCGCCAUgCCGCUGCg -3'
miRNA:   3'- -GCACGugU------------GCaa---GUGGUA-GGCGACGg -5'
6598 3' -54.4 NC_001847.1 + 48324 0.66 0.93682
Target:  5'- --cGUACACGUgcacCGCCAcgCGCuUGCCg -3'
miRNA:   3'- gcaCGUGUGCAa---GUGGUagGCG-ACGG- -5'
6598 3' -54.4 NC_001847.1 + 89768 0.66 0.93682
Target:  5'- aCGUGCACGCGccggCGuacgaggccgUCAUCgCGCUGgCg -3'
miRNA:   3'- -GCACGUGUGCaa--GU----------GGUAG-GCGACgG- -5'
6598 3' -54.4 NC_001847.1 + 123054 0.66 0.93682
Target:  5'- aCG-GC-CGCGggCGCCGgacccgcggcgcUCCGCgGCCu -3'
miRNA:   3'- -GCaCGuGUGCaaGUGGU------------AGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 102294 0.66 0.93682
Target:  5'- --cGCGCGCGagCGCCGcggucUCgGCgGCCa -3'
miRNA:   3'- gcaCGUGUGCaaGUGGU-----AGgCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 79690 0.66 0.93682
Target:  5'- gCG-GCGCGCGccccgccggCGCCAggCGCUGCa -3'
miRNA:   3'- -GCaCGUGUGCaa-------GUGGUagGCGACGg -5'
6598 3' -54.4 NC_001847.1 + 3634 0.66 0.93682
Target:  5'- gCG-GCGCGCGUaCACCAggUCCaccaGC-GCCg -3'
miRNA:   3'- -GCaCGUGUGCAaGUGGU--AGG----CGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 25841 0.66 0.93682
Target:  5'- -cUGCaugaACGCGUcgcUCGCCAUCUuGCUcGCCc -3'
miRNA:   3'- gcACG----UGUGCA---AGUGGUAGG-CGA-CGG- -5'
6598 3' -54.4 NC_001847.1 + 38128 0.66 0.93682
Target:  5'- gGUGCGC-CGggCACCGagucUUCGCgcggcgcGCCg -3'
miRNA:   3'- gCACGUGuGCaaGUGGU----AGGCGa------CGG- -5'
6598 3' -54.4 NC_001847.1 + 85476 0.66 0.931777
Target:  5'- -uUGCACAUGUaCACCGUCUcCUugaaaGCCu -3'
miRNA:   3'- gcACGUGUGCAaGUGGUAGGcGA-----CGG- -5'
6598 3' -54.4 NC_001847.1 + 106410 0.66 0.931777
Target:  5'- --cGCGCGCGgcgaCGCUGcCCGCgGCCg -3'
miRNA:   3'- gcaCGUGUGCaa--GUGGUaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 80551 0.66 0.931777
Target:  5'- gCGgGCGCGCGc-CGCCAgcgCCGCccaGCCc -3'
miRNA:   3'- -GCaCGUGUGCaaGUGGUa--GGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 13603 0.66 0.931777
Target:  5'- gCGUGCGC-CGUUCcCCGgaaCGCaGCUc -3'
miRNA:   3'- -GCACGUGuGCAAGuGGUag-GCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 27435 0.66 0.931777
Target:  5'- gGUGUcguucgcagcgGCGCGgggGCCcugCCGCUGCCc -3'
miRNA:   3'- gCACG-----------UGUGCaagUGGua-GGCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.