miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 5' -57.7 NC_001847.1 + 102695 0.68 0.670836
Target:  5'- gGGGGCAgggcgccgggcGGGCgGCGaaaGGCCCGCAc- -3'
miRNA:   3'- -CCCCGUaa---------CUCG-CGCa--CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 102869 0.68 0.64196
Target:  5'- gGGGGCGgaaauuucGGCGCGgcgGGCCCGgGc- -3'
miRNA:   3'- -CCCCGUaac-----UCGCGCa--CCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 14131 0.7 0.549581
Target:  5'- cGGGCGaUGGGCG-G-GGCCCGCGc- -3'
miRNA:   3'- cCCCGUaACUCGCgCaCCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 134908 0.74 0.35728
Target:  5'- cGGGCGUcgGGGCGCGaGGCCCGgGc- -3'
miRNA:   3'- cCCCGUAa-CUCGCGCaCCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 133073 0.67 0.730611
Target:  5'- cGGGGCGcucgccgccaccgcUgcgGcGGCGCGUGGCCUGgAUg -3'
miRNA:   3'- -CCCCGU--------------Aa--C-UCGCGCACCGGGUgUAa -5'
6598 5' -57.7 NC_001847.1 + 135031 0.68 0.672891
Target:  5'- cGGGGCcg-GGGCGCGgGGCgCCGgAc- -3'
miRNA:   3'- -CCCCGuaaCUCGCGCaCCG-GGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 31827 0.68 0.64196
Target:  5'- gGGGGCA--GAGUGCGaGGaCCCuACGUUc -3'
miRNA:   3'- -CCCCGUaaCUCGCGCaCC-GGG-UGUAA- -5'
6598 5' -57.7 NC_001847.1 + 65736 0.78 0.186966
Target:  5'- cGGGGCGgcgcucgaGAGCGUgGUGGCCCGCGg- -3'
miRNA:   3'- -CCCCGUaa------CUCGCG-CACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 134786 0.68 0.672891
Target:  5'- cGGGGCGggccccgGGGCGCGaaGCCCGgGa- -3'
miRNA:   3'- -CCCCGUaa-----CUCGCGCacCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 34073 0.8 0.144674
Target:  5'- aGGGGCAcgcgGAGCGCGUGGCggCCGCcgUg -3'
miRNA:   3'- -CCCCGUaa--CUCGCGCACCG--GGUGuaA- -5'
6598 5' -57.7 NC_001847.1 + 3944 0.68 0.64196
Target:  5'- cGGGCGgcGAGCGCGa--CCCACAg- -3'
miRNA:   3'- cCCCGUaaCUCGCGCaccGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 81051 0.68 0.672891
Target:  5'- gGGGGCGacgUGGGCGUGggcggGGCCUg---- -3'
miRNA:   3'- -CCCCGUa--ACUCGCGCa----CCGGGuguaa -5'
6598 5' -57.7 NC_001847.1 + 107686 0.69 0.600645
Target:  5'- gGGGGCGgcGGGCaGCGgcagGGCCCccGCGc- -3'
miRNA:   3'- -CCCCGUaaCUCG-CGCa---CCGGG--UGUaa -5'
6598 5' -57.7 NC_001847.1 + 79403 0.7 0.580099
Target:  5'- uGGGGC--UGAGCGCGUacuaggaccgccGuGCCCGCu-- -3'
miRNA:   3'- -CCCCGuaACUCGCGCA------------C-CGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 134517 0.71 0.519578
Target:  5'- gGGGGCGggggGAgGCGCG-GGCCgCGCGc- -3'
miRNA:   3'- -CCCCGUaa--CU-CGCGCaCCGG-GUGUaa -5'
6598 5' -57.7 NC_001847.1 + 104983 0.73 0.390208
Target:  5'- cGGGGaa--GAGCGgGUGGUCCGCGa- -3'
miRNA:   3'- -CCCCguaaCUCGCgCACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 975 0.67 0.743442
Target:  5'- cGGGCGUcuauGCGCc-GGCCCGCAg- -3'
miRNA:   3'- cCCCGUAacu-CGCGcaCCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 71447 0.67 0.733586
Target:  5'- cGGGCGcggcuUUGAGCugaGCGUGGaCCgGCAc- -3'
miRNA:   3'- cCCCGU-----AACUCG---CGCACC-GGgUGUaa -5'
6598 5' -57.7 NC_001847.1 + 70374 0.67 0.713613
Target:  5'- gGGGGCGccgGGGCGCGa-GCUCGCGc- -3'
miRNA:   3'- -CCCCGUaa-CUCGCGCacCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 56867 0.68 0.683145
Target:  5'- cGGcGGCcc-GGGCGCGgccacgGGCCCGCc-- -3'
miRNA:   3'- -CC-CCGuaaCUCGCGCa-----CCGGGUGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.