miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 5' -57.7 NC_001847.1 + 32421 0.66 0.762848
Target:  5'- uGGGGCAgccgggGGGUGCG-GGCCUu---- -3'
miRNA:   3'- -CCCCGUaa----CUCGCGCaCCGGGuguaa -5'
6598 5' -57.7 NC_001847.1 + 68214 0.66 0.762848
Target:  5'- gGGGGCGcacGGGcCGCGgcgGGgCCGCAa- -3'
miRNA:   3'- -CCCCGUaa-CUC-GCGCa--CCgGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 134951 0.66 0.762848
Target:  5'- gGGGGCGggggcggGGGCGgG-GGCCC-CGg- -3'
miRNA:   3'- -CCCCGUaa-----CUCGCgCaCCGGGuGUaa -5'
6598 5' -57.7 NC_001847.1 + 69305 0.66 0.761889
Target:  5'- cGGGCGgaccggcugccuuUUGGGCGCG-GGCCUcggGCGc- -3'
miRNA:   3'- cCCCGU-------------AACUCGCGCaCCGGG---UGUaa -5'
6598 5' -57.7 NC_001847.1 + 29444 0.67 0.7532
Target:  5'- uGGGGCGU--GGCGCc--GCCCGCGg- -3'
miRNA:   3'- -CCCCGUAacUCGCGcacCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 52534 0.67 0.7532
Target:  5'- cGGGGgAUggucgccgGAGgGCGcGGCCgACAUg -3'
miRNA:   3'- -CCCCgUAa-------CUCgCGCaCCGGgUGUAa -5'
6598 5' -57.7 NC_001847.1 + 25994 0.67 0.7532
Target:  5'- cGGGCGggcGGGCGCGcaGGCgCGCAc- -3'
miRNA:   3'- cCCCGUaa-CUCGCGCa-CCGgGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 73236 0.67 0.7532
Target:  5'- gGGGGCGgc-GGCGCG-GGCgCGCu-- -3'
miRNA:   3'- -CCCCGUaacUCGCGCaCCGgGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 18008 0.67 0.7532
Target:  5'- cGGGGCuGUUGGGCGUGgggGGCgUUGCGc- -3'
miRNA:   3'- -CCCCG-UAACUCGCGCa--CCG-GGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 31259 0.67 0.7532
Target:  5'- -cGGCGUggacUGGGaCGCGgaccagGGCCCGCGg- -3'
miRNA:   3'- ccCCGUA----ACUC-GCGCa-----CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 101099 0.67 0.7532
Target:  5'- cGGGGCGggcGGGCGCGUucGCCguCAg- -3'
miRNA:   3'- -CCCCGUaa-CUCGCGCAc-CGGguGUaa -5'
6598 5' -57.7 NC_001847.1 + 134072 0.67 0.7532
Target:  5'- -cGGCGUggacUGGGaCGCGgaccagGGCCCGCGg- -3'
miRNA:   3'- ccCCGUA----ACUC-GCGCa-----CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 128807 0.67 0.7532
Target:  5'- cGGGCGggcGGGCGCGcaGGCgCGCAc- -3'
miRNA:   3'- cCCCGUaa-CUCGCGCa-CCGgGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 102076 0.67 0.7532
Target:  5'- aGGGCA---GGCGCG-GGCCgCGCGc- -3'
miRNA:   3'- cCCCGUaacUCGCGCaCCGG-GUGUaa -5'
6598 5' -57.7 NC_001847.1 + 58842 0.67 0.7532
Target:  5'- -cGGCAcUUGGGC-CG-GGCCCGCAc- -3'
miRNA:   3'- ccCCGU-AACUCGcGCaCCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 5618 0.67 0.743442
Target:  5'- cGGGCG-UGGGCGcCGcGGuCCCGCGc- -3'
miRNA:   3'- cCCCGUaACUCGC-GCaCC-GGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 4977 0.67 0.743442
Target:  5'- gGGGGCAgcugGGGUGCGgcGGCCgCGgCAa- -3'
miRNA:   3'- -CCCCGUaa--CUCGCGCa-CCGG-GU-GUaa -5'
6598 5' -57.7 NC_001847.1 + 119549 0.67 0.743442
Target:  5'- uGGGCAagGGGCGCGcGGCCagACu-- -3'
miRNA:   3'- cCCCGUaaCUCGCGCaCCGGg-UGuaa -5'
6598 5' -57.7 NC_001847.1 + 26749 0.67 0.743442
Target:  5'- uGGGCcgUaGAGCGCG-GGUgCGCGg- -3'
miRNA:   3'- cCCCGuaA-CUCGCGCaCCGgGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 19194 0.67 0.743442
Target:  5'- gGGGGCg--GGGUcUGUGGCCCAgAc- -3'
miRNA:   3'- -CCCCGuaaCUCGcGCACCGGGUgUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.