miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6601 3' -52.3 NC_001847.1 + 124379 0.66 0.980356
Target:  5'- ----cUCuUCcCGCGCGCGCAgcUCUGCc -3'
miRNA:   3'- gauacAGuAGuGCGCGCGUGU--AGGCG- -5'
6601 3' -52.3 NC_001847.1 + 9542 0.66 0.980356
Target:  5'- ---cGUCcgUGCGUGCGC-CAgcgCUGCa -3'
miRNA:   3'- gauaCAGuaGUGCGCGCGuGUa--GGCG- -5'
6601 3' -52.3 NC_001847.1 + 23096 0.66 0.980356
Target:  5'- uCUAcGUagccCGCGCGCGC-CA-CCGCg -3'
miRNA:   3'- -GAUaCAgua-GUGCGCGCGuGUaGGCG- -5'
6601 3' -52.3 NC_001847.1 + 70962 0.66 0.980356
Target:  5'- ---aG-CGUCGCGCcCGCcgcccCGUCCGCg -3'
miRNA:   3'- gauaCaGUAGUGCGcGCGu----GUAGGCG- -5'
6601 3' -52.3 NC_001847.1 + 17826 0.66 0.980356
Target:  5'- -cAUGcCAgUGCG-GCGCACGUCgGCg -3'
miRNA:   3'- gaUACaGUaGUGCgCGCGUGUAGgCG- -5'
6601 3' -52.3 NC_001847.1 + 48398 0.66 0.980356
Target:  5'- ---cGUCA-CGCcaGCGCGaCACAucgcccUCCGCg -3'
miRNA:   3'- gauaCAGUaGUG--CGCGC-GUGU------AGGCG- -5'
6601 3' -52.3 NC_001847.1 + 53694 0.66 0.980356
Target:  5'- -gAUGUg--CGCGCGCgaGCGCG-CCGCc -3'
miRNA:   3'- gaUACAguaGUGCGCG--CGUGUaGGCG- -5'
6601 3' -52.3 NC_001847.1 + 69705 0.66 0.980356
Target:  5'- gCUcgGUC--CGCG-GCGCGCGgcugCCGCc -3'
miRNA:   3'- -GAuaCAGuaGUGCgCGCGUGUa---GGCG- -5'
6601 3' -52.3 NC_001847.1 + 116904 0.66 0.980356
Target:  5'- ---gGcCAUCuuggauccaccCGCGCGCACGaCCGCc -3'
miRNA:   3'- gauaCaGUAGu----------GCGCGCGUGUaGGCG- -5'
6601 3' -52.3 NC_001847.1 + 91433 0.66 0.980356
Target:  5'- ---cGUCcgCGCGCaGCGCGCG-CaaaGCa -3'
miRNA:   3'- gauaCAGuaGUGCG-CGCGUGUaGg--CG- -5'
6601 3' -52.3 NC_001847.1 + 12447 0.66 0.978048
Target:  5'- ---cGcCggCACaGCGCGCGCGgcggagccUCCGCg -3'
miRNA:   3'- gauaCaGuaGUG-CGCGCGUGU--------AGGCG- -5'
6601 3' -52.3 NC_001847.1 + 39537 0.66 0.978048
Target:  5'- gCUAagGUUGUcCACGUaagccucgaaGgGCGCGUCCGCg -3'
miRNA:   3'- -GAUa-CAGUA-GUGCG----------CgCGUGUAGGCG- -5'
6601 3' -52.3 NC_001847.1 + 97800 0.66 0.978048
Target:  5'- ----cUCcgCACGguCGCGCGCGUggCCGCg -3'
miRNA:   3'- gauacAGuaGUGC--GCGCGUGUA--GGCG- -5'
6601 3' -52.3 NC_001847.1 + 98968 0.66 0.978048
Target:  5'- -------cUCGC-CGCGCACcgCCGCa -3'
miRNA:   3'- gauacaguAGUGcGCGCGUGuaGGCG- -5'
6601 3' -52.3 NC_001847.1 + 119842 0.66 0.978048
Target:  5'- ---gGUCGcgCACGCccGCGCGCAgCCaGCa -3'
miRNA:   3'- gauaCAGUa-GUGCG--CGCGUGUaGG-CG- -5'
6601 3' -52.3 NC_001847.1 + 132067 0.66 0.978048
Target:  5'- ---cGUCAUCGCGCuGCugcacuacgaGCACAaCCuGCg -3'
miRNA:   3'- gauaCAGUAGUGCG-CG----------CGUGUaGG-CG- -5'
6601 3' -52.3 NC_001847.1 + 64703 0.66 0.978048
Target:  5'- -aGUG-CGUCAgGCGCGgCACcgCCa- -3'
miRNA:   3'- gaUACaGUAGUgCGCGC-GUGuaGGcg -5'
6601 3' -52.3 NC_001847.1 + 109603 0.66 0.978048
Target:  5'- -cGUGUCcgagGUCGCggagccgguGCGCGC-CAaCCGCg -3'
miRNA:   3'- gaUACAG----UAGUG---------CGCGCGuGUaGGCG- -5'
6601 3' -52.3 NC_001847.1 + 132773 0.66 0.978048
Target:  5'- ---cGUCuUCGCGgGCGCGCGaCUGg -3'
miRNA:   3'- gauaCAGuAGUGCgCGCGUGUaGGCg -5'
6601 3' -52.3 NC_001847.1 + 128448 0.66 0.977807
Target:  5'- gCUcgGcCcugCGCGCGCGCccggccgGCcgCCGCg -3'
miRNA:   3'- -GAuaCaGua-GUGCGCGCG-------UGuaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.