miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6601 5' -52.2 NC_001847.1 + 77778 0.66 0.979527
Target:  5'- cGACGUGCgggagGCCCagcgcggaugUCUGGaGGAcgUGGCg -3'
miRNA:   3'- aCUGCAUG-----UGGG----------AGGUC-CCUuaACUG- -5'
6601 5' -52.2 NC_001847.1 + 13713 0.66 0.978829
Target:  5'- gGACGUGCggcagaugacagcgGCCUUCCuGGGcGUggGGCu -3'
miRNA:   3'- aCUGCAUG--------------UGGGAGGuCCCuUAa-CUG- -5'
6601 5' -52.2 NC_001847.1 + 59245 0.66 0.977132
Target:  5'- cGGCGaugGCGCCggCCAGGGccaugauUUGGCu -3'
miRNA:   3'- aCUGCa--UGUGGgaGGUCCCuu-----AACUG- -5'
6601 5' -52.2 NC_001847.1 + 54494 0.66 0.977132
Target:  5'- cGACGgcgGCGCCggggCCGGGGuggggGGCg -3'
miRNA:   3'- aCUGCa--UGUGGga--GGUCCCuuaa-CUG- -5'
6601 5' -52.2 NC_001847.1 + 56903 0.66 0.971734
Target:  5'- cGACGU-CGgCCUCCAGGGc---GAa -3'
miRNA:   3'- aCUGCAuGUgGGAGGUCCCuuaaCUg -5'
6601 5' -52.2 NC_001847.1 + 29917 0.66 0.971734
Target:  5'- -cGCGggggGC-CCCUCgGGGGAGgaGACu -3'
miRNA:   3'- acUGCa---UGuGGGAGgUCCCUUaaCUG- -5'
6601 5' -52.2 NC_001847.1 + 115366 0.66 0.968716
Target:  5'- cGACGUGCAgCCCUucgccguuuuuaCUAGGGcg-UGAUc -3'
miRNA:   3'- aCUGCAUGU-GGGA------------GGUCCCuuaACUG- -5'
6601 5' -52.2 NC_001847.1 + 29188 0.67 0.962005
Target:  5'- gGACGUGCugCCguugCUGGGGcugcccGACg -3'
miRNA:   3'- aCUGCAUGugGGa---GGUCCCuuaa--CUG- -5'
6601 5' -52.2 NC_001847.1 + 77263 0.67 0.954356
Target:  5'- cUGGCGggcgACACCCUCguGGcGAc--GGCg -3'
miRNA:   3'- -ACUGCa---UGUGGGAGguCC-CUuaaCUG- -5'
6601 5' -52.2 NC_001847.1 + 56126 0.67 0.950166
Target:  5'- uUGGCgGUGCACgccgcgcagCCUCCGGGG---UGGCu -3'
miRNA:   3'- -ACUG-CAUGUG---------GGAGGUCCCuuaACUG- -5'
6601 5' -52.2 NC_001847.1 + 74115 0.68 0.936092
Target:  5'- gGGCGgcCGCgC-CCGGGGAugUGACg -3'
miRNA:   3'- aCUGCauGUGgGaGGUCCCUuaACUG- -5'
6601 5' -52.2 NC_001847.1 + 133149 0.68 0.93089
Target:  5'- gGugGUGCucuacgACCCgcugcCCGGGGAGgcgcUGGCg -3'
miRNA:   3'- aCugCAUG------UGGGa----GGUCCCUUa---ACUG- -5'
6601 5' -52.2 NC_001847.1 + 30336 0.68 0.93089
Target:  5'- gGugGUGCucuacgACCCgcugcCCGGGGAGgcgcUGGCg -3'
miRNA:   3'- aCugCAUG------UGGGa----GGUCCCUUa---ACUG- -5'
6601 5' -52.2 NC_001847.1 + 43605 0.69 0.907516
Target:  5'- gGGCGUGC-CCCUUgAGGGcuc-GACg -3'
miRNA:   3'- aCUGCAUGuGGGAGgUCCCuuaaCUG- -5'
6601 5' -52.2 NC_001847.1 + 42696 0.69 0.901035
Target:  5'- aGACGUggACACCUcCCAGcccGGAuUUGGCg -3'
miRNA:   3'- aCUGCA--UGUGGGaGGUC---CCUuAACUG- -5'
6601 5' -52.2 NC_001847.1 + 134625 0.7 0.87937
Target:  5'- gGGCacuUGCCCUCCgcggacaGGGGggUUGGCg -3'
miRNA:   3'- aCUGcauGUGGGAGG-------UCCCuuAACUG- -5'
6601 5' -52.2 NC_001847.1 + 31812 0.7 0.87937
Target:  5'- gGGCacuUGCCCUCCgcggacaGGGGggUUGGCg -3'
miRNA:   3'- aCUGcauGUGGGAGG-------UCCCuuAACUG- -5'
6601 5' -52.2 NC_001847.1 + 54694 0.71 0.805224
Target:  5'- cGGCGgcgGCGCCCg-CGGGGAGgacGACg -3'
miRNA:   3'- aCUGCa--UGUGGGagGUCCCUUaa-CUG- -5'
6601 5' -52.2 NC_001847.1 + 71449 0.72 0.795945
Target:  5'- cGAgGUugGCCCcgggcgcuUCCGGGGGcaUGGCg -3'
miRNA:   3'- aCUgCAugUGGG--------AGGUCCCUuaACUG- -5'
6601 5' -52.2 NC_001847.1 + 19647 0.72 0.786506
Target:  5'- aGGCGcgGCGCCCuUCCAGGGGcaagcccaGACg -3'
miRNA:   3'- aCUGCa-UGUGGG-AGGUCCCUuaa-----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.