miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6602 3' -68 NC_001847.1 + 130593 0.66 0.375335
Target:  5'- cACUuCCacgCCgCGCCaCCcGCGGGCGGCc -3'
miRNA:   3'- -UGGcGGa--GGgGCGG-GGaCGCCCGCUG- -5'
6602 3' -68 NC_001847.1 + 59380 0.66 0.375335
Target:  5'- gGCCGUgUUCaCCCGCgCg-GCGGGCGAg -3'
miRNA:   3'- -UGGCG-GAG-GGGCGgGgaCGCCCGCUg -5'
6602 3' -68 NC_001847.1 + 57523 0.66 0.375335
Target:  5'- gGCgCGCCgUCCUCGCCCa-GCGGcGCcGCc -3'
miRNA:   3'- -UG-GCGG-AGGGGCGGGgaCGCC-CGcUG- -5'
6602 3' -68 NC_001847.1 + 5526 0.66 0.375335
Target:  5'- gGCCGUCUCCUCcuuCCUCgcaccgGCGgcGGCGGCa -3'
miRNA:   3'- -UGGCGGAGGGGc--GGGGa-----CGC--CCGCUG- -5'
6602 3' -68 NC_001847.1 + 108339 0.66 0.375335
Target:  5'- gGCCGUCUCCUCcuuCCUCgcaccgGCGgcGGCGGCa -3'
miRNA:   3'- -UGGCGGAGGGGc--GGGGa-----CGC--CCGCUG- -5'
6602 3' -68 NC_001847.1 + 47135 0.66 0.375335
Target:  5'- cUCGCCgaugacgCCgCGCCCCU-CGGGCccGGCc -3'
miRNA:   3'- uGGCGGa------GGgGCGGGGAcGCCCG--CUG- -5'
6602 3' -68 NC_001847.1 + 43556 0.66 0.375335
Target:  5'- cGCCGCgguUUgCgCGCUUCgccGCGGGCGACg -3'
miRNA:   3'- -UGGCG---GAgGgGCGGGGa--CGCCCGCUG- -5'
6602 3' -68 NC_001847.1 + 110916 0.66 0.367742
Target:  5'- cGCCGaCCcacguggCCCCGUacaaCCgcgggGCGGGCGGg -3'
miRNA:   3'- -UGGC-GGa------GGGGCGg---GGa----CGCCCGCUg -5'
6602 3' -68 NC_001847.1 + 109783 0.66 0.367742
Target:  5'- cGCCGCC-CCCUGCCaucagCUUGCcGGCGu- -3'
miRNA:   3'- -UGGCGGaGGGGCGG-----GGACGcCCGCug -5'
6602 3' -68 NC_001847.1 + 55603 0.66 0.367742
Target:  5'- aGCCccaGCCcCCCCgGCCCCgac-GGCGACg -3'
miRNA:   3'- -UGG---CGGaGGGG-CGGGGacgcCCGCUG- -5'
6602 3' -68 NC_001847.1 + 67633 0.66 0.367742
Target:  5'- gGCCGCgUCCgcgaCCGUgCCCUcgucgagggGCGcGGCGGCg -3'
miRNA:   3'- -UGGCGgAGG----GGCG-GGGA---------CGC-CCGCUG- -5'
6602 3' -68 NC_001847.1 + 75756 0.66 0.367742
Target:  5'- aACUG-CUCgCCCGCCgC-GCGGGUGAa -3'
miRNA:   3'- -UGGCgGAG-GGGCGGgGaCGCCCGCUg -5'
6602 3' -68 NC_001847.1 + 8103 0.66 0.367742
Target:  5'- cGCCGaCCcacguggCCCCGUacaaCCgcgggGCGGGCGGg -3'
miRNA:   3'- -UGGC-GGa------GGGGCGg---GGa----CGCCCGCUg -5'
6602 3' -68 NC_001847.1 + 46089 0.66 0.367742
Target:  5'- uCCGCCaggcgCCCgGCCCgCUuccgcggggGCuGGGCGAUg -3'
miRNA:   3'- uGGCGGa----GGGgCGGG-GA---------CG-CCCGCUG- -5'
6602 3' -68 NC_001847.1 + 37419 0.66 0.367742
Target:  5'- cGCCGCUUCCgcuuCUGCCCCcGCcgacgacGGCGAg -3'
miRNA:   3'- -UGGCGGAGG----GGCGGGGaCGc------CCGCUg -5'
6602 3' -68 NC_001847.1 + 88377 0.66 0.367742
Target:  5'- cGCgGCggaCCgGCCCCgcgcgGCGGGCGGg -3'
miRNA:   3'- -UGgCGgagGGgCGGGGa----CGCCCGCUg -5'
6602 3' -68 NC_001847.1 + 81419 0.66 0.367742
Target:  5'- cGCCGCgCgccgaUCCGCCCCgcgagccGCcGGCGGCg -3'
miRNA:   3'- -UGGCG-Gag---GGGCGGGGa------CGcCCGCUG- -5'
6602 3' -68 NC_001847.1 + 73154 0.66 0.365484
Target:  5'- cGCCGCUcuucgggcccauuaUgCCCGCCgCgccgGCGGGCacGGCg -3'
miRNA:   3'- -UGGCGG--------------AgGGGCGGgGa---CGCCCG--CUG- -5'
6602 3' -68 NC_001847.1 + 76622 0.66 0.365484
Target:  5'- gGCgGCCUCUUCGUgucccugcccgucgCCCUGCccgaGGGCGGg -3'
miRNA:   3'- -UGgCGGAGGGGCG--------------GGGACG----CCCGCUg -5'
6602 3' -68 NC_001847.1 + 77226 0.66 0.365484
Target:  5'- gGCCGCCgggCCCggacuuggcgcgguCGCgCgggcgcugGCGGGCGACa -3'
miRNA:   3'- -UGGCGGa--GGG--------------GCGgGga------CGCCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.