Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6602 | 5' | -51.8 | NC_001847.1 | + | 33937 | 0.66 | 0.988704 |
Target: 5'- cCCGUgugcagGCCCGCcggagaagaaGGACAGAGUuagacCGCGc -3' miRNA: 3'- -GGCA------CGGGCGua--------UCUGUUUCAu----GCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 54699 | 0.66 | 0.988704 |
Target: 5'- gCGgcGCCCGCGgggaGGACGAc--GCGCGg -3' miRNA: 3'- gGCa-CGGGCGUa---UCUGUUucaUGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 16098 | 0.66 | 0.988704 |
Target: 5'- gCGUGCCgGCGUAccgcuucccACAgcGUGCGCc -3' miRNA: 3'- gGCACGGgCGUAUc--------UGUuuCAUGCGc -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 73676 | 0.66 | 0.988704 |
Target: 5'- cCUG-GCCCGCGccaucGAUGAAG-GCGCGg -3' miRNA: 3'- -GGCaCGGGCGUau---CUGUUUCaUGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 82314 | 0.66 | 0.988704 |
Target: 5'- aCCGgcGCCCGCGaaacgcccgAGGucCAGuGUGCGCGg -3' miRNA: 3'- -GGCa-CGGGCGUa--------UCU--GUUuCAUGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 84834 | 0.66 | 0.988704 |
Target: 5'- gCGUGCgcacaaccccCCGCAgcUGGugGAAGUAgucgUGCGa -3' miRNA: 3'- gGCACG----------GGCGU--AUCugUUUCAU----GCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 73395 | 0.66 | 0.988704 |
Target: 5'- cCCGUggGCCuCGCAgcGACAcucGUACgGCGa -3' miRNA: 3'- -GGCA--CGG-GCGUauCUGUuu-CAUG-CGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 58741 | 0.66 | 0.988704 |
Target: 5'- uCCGgcgGCCCGaCAgcGGCGgcGgcCGCGa -3' miRNA: 3'- -GGCa--CGGGC-GUauCUGUuuCauGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 31807 | 0.66 | 0.988704 |
Target: 5'- gCCGUGgCggugggcggCGCGgGGGCAGAGUGCGa- -3' miRNA: 3'- -GGCACgG---------GCGUaUCUGUUUCAUGCgc -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 87089 | 0.66 | 0.988559 |
Target: 5'- aCGcGCCCGCAgcuuuucuACAAGGUgucuucggccagcGCGCGg -3' miRNA: 3'- gGCaCGGGCGUauc-----UGUUUCA-------------UGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 30858 | 0.66 | 0.988559 |
Target: 5'- gCCGcUGCggcucugCCGCGgcGGCAAcGUGCGCu -3' miRNA: 3'- -GGC-ACG-------GGCGUauCUGUUuCAUGCGc -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 133671 | 0.66 | 0.988559 |
Target: 5'- gCCGcUGCggcucugCCGCGgcGGCAAcGUGCGCu -3' miRNA: 3'- -GGC-ACG-------GGCGUauCUGUUuCAUGCGc -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 14991 | 0.66 | 0.987809 |
Target: 5'- ---gGCaCCGCAUcgcgagcgcgccggaGGACAAGGU-CGCGg -3' miRNA: 3'- ggcaCG-GGCGUA---------------UCUGUUUCAuGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 91763 | 0.66 | 0.987183 |
Target: 5'- gCCGUGaagaUCGCAgcgAGcuccGCGAGGUACGUc -3' miRNA: 3'- -GGCACg---GGCGUa--UC----UGUUUCAUGCGc -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 68070 | 0.66 | 0.987183 |
Target: 5'- gCGcGCCUGCGgcgGGGCGAAcgccgcgGCGCGa -3' miRNA: 3'- gGCaCGGGCGUa--UCUGUUUca-----UGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 111073 | 0.66 | 0.987183 |
Target: 5'- aCCGUGCCCGUgagaacgcuGGCAGAaUGCcaGCGu -3' miRNA: 3'- -GGCACGGGCGuau------CUGUUUcAUG--CGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 8260 | 0.66 | 0.987182 |
Target: 5'- aCCGUGCCCGUgagaacgcuGGCAGAaUGCcaGCGu -3' miRNA: 3'- -GGCACGGGCGuau------CUGUUUcAUG--CGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 27904 | 0.66 | 0.987182 |
Target: 5'- gCCGaGgCCGaggGGGCGGAGgGCGCGg -3' miRNA: 3'- -GGCaCgGGCguaUCUGUUUCaUGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 92269 | 0.66 | 0.987182 |
Target: 5'- ---cGCCCacuaGCGUGG-CGcGGUGCGCGg -3' miRNA: 3'- ggcaCGGG----CGUAUCuGUuUCAUGCGC- -5' |
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6602 | 5' | -51.8 | NC_001847.1 | + | 130192 | 0.66 | 0.987182 |
Target: 5'- cCCG-GCCUGaagAGACGGGcgGCGCGg -3' miRNA: 3'- -GGCaCGGGCguaUCUGUUUcaUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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