miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6602 5' -51.8 NC_001847.1 + 33937 0.66 0.988704
Target:  5'- cCCGUgugcagGCCCGCcggagaagaaGGACAGAGUuagacCGCGc -3'
miRNA:   3'- -GGCA------CGGGCGua--------UCUGUUUCAu----GCGC- -5'
6602 5' -51.8 NC_001847.1 + 54699 0.66 0.988704
Target:  5'- gCGgcGCCCGCGgggaGGACGAc--GCGCGg -3'
miRNA:   3'- gGCa-CGGGCGUa---UCUGUUucaUGCGC- -5'
6602 5' -51.8 NC_001847.1 + 16098 0.66 0.988704
Target:  5'- gCGUGCCgGCGUAccgcuucccACAgcGUGCGCc -3'
miRNA:   3'- gGCACGGgCGUAUc--------UGUuuCAUGCGc -5'
6602 5' -51.8 NC_001847.1 + 73676 0.66 0.988704
Target:  5'- cCUG-GCCCGCGccaucGAUGAAG-GCGCGg -3'
miRNA:   3'- -GGCaCGGGCGUau---CUGUUUCaUGCGC- -5'
6602 5' -51.8 NC_001847.1 + 82314 0.66 0.988704
Target:  5'- aCCGgcGCCCGCGaaacgcccgAGGucCAGuGUGCGCGg -3'
miRNA:   3'- -GGCa-CGGGCGUa--------UCU--GUUuCAUGCGC- -5'
6602 5' -51.8 NC_001847.1 + 84834 0.66 0.988704
Target:  5'- gCGUGCgcacaaccccCCGCAgcUGGugGAAGUAgucgUGCGa -3'
miRNA:   3'- gGCACG----------GGCGU--AUCugUUUCAU----GCGC- -5'
6602 5' -51.8 NC_001847.1 + 73395 0.66 0.988704
Target:  5'- cCCGUggGCCuCGCAgcGACAcucGUACgGCGa -3'
miRNA:   3'- -GGCA--CGG-GCGUauCUGUuu-CAUG-CGC- -5'
6602 5' -51.8 NC_001847.1 + 58741 0.66 0.988704
Target:  5'- uCCGgcgGCCCGaCAgcGGCGgcGgcCGCGa -3'
miRNA:   3'- -GGCa--CGGGC-GUauCUGUuuCauGCGC- -5'
6602 5' -51.8 NC_001847.1 + 31807 0.66 0.988704
Target:  5'- gCCGUGgCggugggcggCGCGgGGGCAGAGUGCGa- -3'
miRNA:   3'- -GGCACgG---------GCGUaUCUGUUUCAUGCgc -5'
6602 5' -51.8 NC_001847.1 + 87089 0.66 0.988559
Target:  5'- aCGcGCCCGCAgcuuuucuACAAGGUgucuucggccagcGCGCGg -3'
miRNA:   3'- gGCaCGGGCGUauc-----UGUUUCA-------------UGCGC- -5'
6602 5' -51.8 NC_001847.1 + 30858 0.66 0.988559
Target:  5'- gCCGcUGCggcucugCCGCGgcGGCAAcGUGCGCu -3'
miRNA:   3'- -GGC-ACG-------GGCGUauCUGUUuCAUGCGc -5'
6602 5' -51.8 NC_001847.1 + 133671 0.66 0.988559
Target:  5'- gCCGcUGCggcucugCCGCGgcGGCAAcGUGCGCu -3'
miRNA:   3'- -GGC-ACG-------GGCGUauCUGUUuCAUGCGc -5'
6602 5' -51.8 NC_001847.1 + 14991 0.66 0.987809
Target:  5'- ---gGCaCCGCAUcgcgagcgcgccggaGGACAAGGU-CGCGg -3'
miRNA:   3'- ggcaCG-GGCGUA---------------UCUGUUUCAuGCGC- -5'
6602 5' -51.8 NC_001847.1 + 91763 0.66 0.987183
Target:  5'- gCCGUGaagaUCGCAgcgAGcuccGCGAGGUACGUc -3'
miRNA:   3'- -GGCACg---GGCGUa--UC----UGUUUCAUGCGc -5'
6602 5' -51.8 NC_001847.1 + 68070 0.66 0.987183
Target:  5'- gCGcGCCUGCGgcgGGGCGAAcgccgcgGCGCGa -3'
miRNA:   3'- gGCaCGGGCGUa--UCUGUUUca-----UGCGC- -5'
6602 5' -51.8 NC_001847.1 + 111073 0.66 0.987183
Target:  5'- aCCGUGCCCGUgagaacgcuGGCAGAaUGCcaGCGu -3'
miRNA:   3'- -GGCACGGGCGuau------CUGUUUcAUG--CGC- -5'
6602 5' -51.8 NC_001847.1 + 8260 0.66 0.987182
Target:  5'- aCCGUGCCCGUgagaacgcuGGCAGAaUGCcaGCGu -3'
miRNA:   3'- -GGCACGGGCGuau------CUGUUUcAUG--CGC- -5'
6602 5' -51.8 NC_001847.1 + 27904 0.66 0.987182
Target:  5'- gCCGaGgCCGaggGGGCGGAGgGCGCGg -3'
miRNA:   3'- -GGCaCgGGCguaUCUGUUUCaUGCGC- -5'
6602 5' -51.8 NC_001847.1 + 92269 0.66 0.987182
Target:  5'- ---cGCCCacuaGCGUGG-CGcGGUGCGCGg -3'
miRNA:   3'- ggcaCGGG----CGUAUCuGUuUCAUGCGC- -5'
6602 5' -51.8 NC_001847.1 + 130192 0.66 0.987182
Target:  5'- cCCG-GCCUGaagAGACGGGcgGCGCGg -3'
miRNA:   3'- -GGCaCGGGCguaUCUGUUUcaUGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.