miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 134207 0.66 0.911437
Target:  5'- -----cGGCGCGcgcGGGCCgaGGGCg -3'
miRNA:   3'- uuguuaCUGCGUuuuCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 90376 0.66 0.911437
Target:  5'- uGCug-GACGCGGAccacGGCCCCcGGCc -3'
miRNA:   3'- uUGuuaCUGCGUUUuc--CCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 50082 0.66 0.911437
Target:  5'- gGACccgGGCGCGGccAAGGcugccGCgCCGGGCg -3'
miRNA:   3'- -UUGuuaCUGCGUU--UUCC-----CGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 68795 0.66 0.911437
Target:  5'- cGGCGGccGCGCGAgcGGGCCgaCGGGg -3'
miRNA:   3'- -UUGUUacUGCGUUuuCCCGGg-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 87395 0.66 0.911437
Target:  5'- gGACAAguacuUGcGCGCGGGcGGGGCCCCGcccGCc -3'
miRNA:   3'- -UUGUU-----AC-UGCGUUU-UCCCGGGGCc--CG- -5'
6603 3' -55.1 NC_001847.1 + 17706 0.66 0.911437
Target:  5'- cGCcAUGuC-CAAGAGGGCCa-GGGCg -3'
miRNA:   3'- uUGuUACuGcGUUUUCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 73009 0.66 0.911437
Target:  5'- cAGCGcgGGCGCGGAAccaGGCCgCGGcaGCg -3'
miRNA:   3'- -UUGUuaCUGCGUUUUc--CCGGgGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 46219 0.66 0.907717
Target:  5'- cGCGcAUGGCGCAGAgccgcgcgcgcgcaaGGGagccGCCCCcGGCg -3'
miRNA:   3'- uUGU-UACUGCGUUU---------------UCC----CGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 104345 0.66 0.905188
Target:  5'- -----cGGCGCGcgcGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGU---UUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 122644 0.66 0.905188
Target:  5'- -----cGACGCGccGGcugcGGCCuCCGGGCu -3'
miRNA:   3'- uuguuaCUGCGUuuUC----CCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 134197 0.66 0.905188
Target:  5'- -----cGGCGCAGucGu-CCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUuuCccGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 70733 0.66 0.905188
Target:  5'- cGGCAGUGGCGCGcguaAAGGcGGaCCUgGuGGCc -3'
miRNA:   3'- -UUGUUACUGCGU----UUUC-CC-GGGgC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 42722 0.66 0.905188
Target:  5'- ----uUGGCGCGGcGGGcGGCCgCgCGGGCg -3'
miRNA:   3'- uuguuACUGCGUU-UUC-CCGG-G-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 31384 0.66 0.905188
Target:  5'- -----cGGCGCAGucGu-CCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUuuCccGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 1532 0.66 0.905188
Target:  5'- -----cGGCGCGcgcGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGU---UUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 72204 0.66 0.905188
Target:  5'- uACuccgGGuCGCGGAggcAGGGCacgCCCGGGCc -3'
miRNA:   3'- uUGuua-CU-GCGUUU---UCCCG---GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 55275 0.66 0.898693
Target:  5'- -----cGGCGCc---GGGCCCggaCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCGGG---GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 77213 0.66 0.898693
Target:  5'- -----cGACGgAGccgcGGGCCgCCGGGCc -3'
miRNA:   3'- uuguuaCUGCgUUuu--CCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 51599 0.66 0.898693
Target:  5'- gAGCGGcGGCGUGAAcauucucagcGGGCCgCUGGGCu -3'
miRNA:   3'- -UUGUUaCUGCGUUUu---------CCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 12486 0.66 0.898693
Target:  5'- cGC-GUGGCgGCGGGGGcGGCcaagaaCCCGGGCc -3'
miRNA:   3'- uUGuUACUG-CGUUUUC-CCG------GGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.