miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 95751 0.66 0.877763
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCn -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32215 0.66 0.880676
Target:  5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3'
miRNA:   3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 21560 0.66 0.896027
Target:  5'- uGACAAgggccggggagagGGCGggaGAGGGGGCCgCgGGGCc -3'
miRNA:   3'- -UUGUUa------------CUGCg--UUUUCCCGG-GgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 72204 0.66 0.905188
Target:  5'- uACuccgGGuCGCGGAggcAGGGCacgCCCGGGCc -3'
miRNA:   3'- uUGuua-CU-GCGUUU---UCCCG---GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 1532 0.66 0.905188
Target:  5'- -----cGGCGCGcgcGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGU---UUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 31384 0.66 0.905188
Target:  5'- -----cGGCGCAGucGu-CCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUuuCccGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 46219 0.66 0.907717
Target:  5'- cGCGcAUGGCGCAGAgccgcgcgcgcgcaaGGGagccGCCCCcGGCg -3'
miRNA:   3'- uUGU-UACUGCGUUU---------------UCC----CGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 42722 0.66 0.905188
Target:  5'- ----uUGGCGCGGcGGGcGGCCgCgCGGGCg -3'
miRNA:   3'- uuguuACUGCGUU-UUC-CCGG-G-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 17706 0.66 0.911437
Target:  5'- cGCcAUGuC-CAAGAGGGCCa-GGGCg -3'
miRNA:   3'- uUGuUACuGcGUUUUCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 73009 0.66 0.911437
Target:  5'- cAGCGcgGGCGCGGAAccaGGCCgCGGcaGCg -3'
miRNA:   3'- -UUGUuaCUGCGUUUUc--CCGGgGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 53640 0.66 0.891955
Target:  5'- cGCGuccGCGaCAAAGaccGGGCaCCCGGGCc -3'
miRNA:   3'- uUGUuacUGC-GUUUU---CCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 109372 0.66 0.891955
Target:  5'- cGCGGaaugGGCGCAGcuGGGCUgCGGuGCc -3'
miRNA:   3'- uUGUUa---CUGCGUUuuCCCGGgGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 24330 0.66 0.882837
Target:  5'- cGCGcgGGgGCGAuguccaaguggaggGGGGGCCCgagcaGGGCc -3'
miRNA:   3'- uUGUuaCUgCGUU--------------UUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 132451 0.66 0.884266
Target:  5'- cGCAAgcuggagGGCGCGGAGGacgagccgaugccGGCCgagccgCCGGGCg -3'
miRNA:   3'- uUGUUa------CUGCGUUUUC-------------CCGG------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 28345 0.66 0.884977
Target:  5'- cGCGggGccGCGCGcccGGGCCCCcGGCg -3'
miRNA:   3'- uUGUuaC--UGCGUuuuCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 32315 0.66 0.884977
Target:  5'- -cCGggGuCGC-AGGGGGCCCgCGcGGCg -3'
miRNA:   3'- uuGUuaCuGCGuUUUCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 77255 0.66 0.884977
Target:  5'- -----cGGgGCGGuuGcGCCCCGGGCg -3'
miRNA:   3'- uuguuaCUgCGUUuuCcCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 56326 0.66 0.891268
Target:  5'- cGCGAaGGCcguaaagGCGAAGGGGUCCacaugcuccgCGGGCg -3'
miRNA:   3'- uUGUUaCUG-------CGUUUUCCCGGG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 70 0.66 0.891955
Target:  5'- -----cGGCGCGGc-GGGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGUUuuCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 52892 0.66 0.891955
Target:  5'- aGGCGAUGGC-CAGuccuaGGUCCgCGGGCa -3'
miRNA:   3'- -UUGUUACUGcGUUuuc--CCGGG-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.