miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 55275 0.66 0.898693
Target:  5'- -----cGGCGCc---GGGCCCggaCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCGGG---GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 65741 0.66 0.884977
Target:  5'- -----cGGCGCucGAGAGcgugguGGCCCgCGGGCg -3'
miRNA:   3'- uuguuaCUGCG--UUUUC------CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 78686 0.66 0.884977
Target:  5'- cACGcgGGCGCu----GGUgCCGGGCa -3'
miRNA:   3'- uUGUuaCUGCGuuuucCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 28345 0.66 0.884977
Target:  5'- cGCGggGccGCGCGcccGGGCCCCcGGCg -3'
miRNA:   3'- uUGUuaC--UGCGUuuuCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 135028 0.66 0.880676
Target:  5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3'
miRNA:   3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 131158 0.66 0.884977
Target:  5'- cGCGggGccGCGCGcccGGGCCCCcGGCg -3'
miRNA:   3'- uUGUuaC--UGCGUuuuCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 32170 0.66 0.877029
Target:  5'- -cCAA-GACGCAGAAccccGGCCCCccggccgGGGCc -3'
miRNA:   3'- uuGUUaCUGCGUUUUc---CCGGGG-------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 91997 0.67 0.870319
Target:  5'- cAGCGAcugcgGGCGCAGcgcccgcGGGCCCgcgccgucugCGGGCa -3'
miRNA:   3'- -UUGUUa----CUGCGUUuu-----CCCGGG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32044 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 76728 0.67 0.870319
Target:  5'- gGACGGUcgGGCGgGGAAggacggucGGGCgCUCGGGCg -3'
miRNA:   3'- -UUGUUA--CUGCgUUUU--------CCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 12302 0.67 0.870319
Target:  5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3'
miRNA:   3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 111339 0.67 0.837519
Target:  5'- gAGCAGUGgucgguggccgccGCGCu---GGGCgaccucgcgCCCGGGCa -3'
miRNA:   3'- -UUGUUAC-------------UGCGuuuuCCCG---------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 5671 0.67 0.838361
Target:  5'- -----aGGCGCGAAGguGGGCCggCCGGGg -3'
miRNA:   3'- uuguuaCUGCGUUUU--CCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 83467 0.67 0.838361
Target:  5'- -----gGGCGUc---GGGCuCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 79558 0.67 0.838361
Target:  5'- ----cUGGgGCucgcGGGGGGCgCCGGGCu -3'
miRNA:   3'- uuguuACUgCGu---UUUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 47841 0.67 0.838361
Target:  5'- -cCAAUGcGCGCAAAucggccGcGGCCgCGGGCc -3'
miRNA:   3'- uuGUUAC-UGCGUUUu-----C-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15111 0.67 0.846664
Target:  5'- gGGCGGU--CGgGGGAGGGCcuaggccgcucaCCCGGGCa -3'
miRNA:   3'- -UUGUUAcuGCgUUUUCCCG------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32784 0.67 0.846664
Target:  5'- ----cUGugGgGGGAGGGCCggGGGCg -3'
miRNA:   3'- uuguuACugCgUUUUCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 37019 0.67 0.846664
Target:  5'- cACcGUG-CGgAGcGGGGCgCCGGGCu -3'
miRNA:   3'- uUGuUACuGCgUUuUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43643 0.67 0.846664
Target:  5'- uGCAG-GACGCGcgcGAGGGCU-CGGGUg -3'
miRNA:   3'- uUGUUaCUGCGUu--UUCCCGGgGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.