miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 24086 0.67 0.854764
Target:  5'- gGGCAcgGuCGUGAGAgcuggcgcGGGUCCCaGGGCu -3'
miRNA:   3'- -UUGUuaCuGCGUUUU--------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 116158 0.67 0.854764
Target:  5'- -----aGGCGCu--GGcGGCCgCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 38548 0.67 0.854764
Target:  5'- uAAUggUGACGUGGAugucucgccGGGCgCCCaGGCa -3'
miRNA:   3'- -UUGuuACUGCGUUUu--------CCCG-GGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 123207 0.67 0.854764
Target:  5'- cGGCGuccAUGGCGUcuAAGGGCgCCuagaaagccgCGGGCg -3'
miRNA:   3'- -UUGU---UACUGCGuuUUCCCG-GG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 62602 0.67 0.854764
Target:  5'- aGGCAAaGAgCGCGugcacGGGCgCCGGGUa -3'
miRNA:   3'- -UUGUUaCU-GCGUuuu--CCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 70698 0.67 0.854764
Target:  5'- -cCGcgGGCgGCGGcGGGGGCgCCCGcGGCg -3'
miRNA:   3'- uuGUuaCUG-CGUU-UUCCCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 80288 0.67 0.854764
Target:  5'- aAGCGGUGcGCGuCAAAGGuGGCgUCCGaGGCg -3'
miRNA:   3'- -UUGUUAC-UGC-GUUUUC-CCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 83467 0.67 0.838361
Target:  5'- -----gGGCGUc---GGGCuCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 79558 0.67 0.838361
Target:  5'- ----cUGGgGCucgcGGGGGGCgCCGGGCu -3'
miRNA:   3'- uuguuACUgCGu---UUUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 125196 0.67 0.862651
Target:  5'- -----cGGgGCAGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUgCGUUUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 130257 0.67 0.854764
Target:  5'- cGCAGcGGCGCG--GGGGCCCUGccGCu -3'
miRNA:   3'- uUGUUaCUGCGUuuUCCCGGGGCc-CG- -5'
6603 3' -55.1 NC_001847.1 + 35992 0.67 0.854764
Target:  5'- cGCAGccGCGCugcAGGcGGCCgCGGGCg -3'
miRNA:   3'- uUGUUacUGCGuu-UUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 126899 0.67 0.854764
Target:  5'- gGGCAcgGuCGUGAGAgcuggcgcGGGUCCCaGGGCu -3'
miRNA:   3'- -UUGUuaCuGCGUUUU--------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 76728 0.67 0.870319
Target:  5'- gGACGGUcgGGCGgGGAAggacggucGGGCgCUCGGGCg -3'
miRNA:   3'- -UUGUUA--CUGCgUUUU--------CCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95261 0.67 0.854764
Target:  5'- cGCGAUcgggGGCGCGAucGGGGGCgCCGGcaaGCu -3'
miRNA:   3'- uUGUUA----CUGCGUU--UUCCCGgGGCC---CG- -5'
6603 3' -55.1 NC_001847.1 + 32044 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 12302 0.67 0.870319
Target:  5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3'
miRNA:   3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 72807 0.67 0.869563
Target:  5'- cGCucuuuGUGGCgGCAucGGGGCCauggcgcUCGGGCg -3'
miRNA:   3'- uUGu----UACUG-CGUuuUCCCGG-------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 111339 0.67 0.837519
Target:  5'- gAGCAGUGgucgguggccgccGCGCu---GGGCgaccucgcgCCCGGGCa -3'
miRNA:   3'- -UUGUUAC-------------UGCGuuuuCCCG---------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 5671 0.67 0.838361
Target:  5'- -----aGGCGCGAAGguGGGCCggCCGGGg -3'
miRNA:   3'- uuguuaCUGCGUUUU--CCCGG--GGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.