Results 101 - 120 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6603 | 3' | -55.1 | NC_001847.1 | + | 44600 | 0.67 | 0.862651 |
Target: 5'- ------cGCGCGGcGAGGGCCgCCaGGGCg -3' miRNA: 3'- uuguuacUGCGUU-UUCCCGG-GG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 62602 | 0.67 | 0.854764 |
Target: 5'- aGGCAAaGAgCGCGugcacGGGCgCCGGGUa -3' miRNA: 3'- -UUGUUaCU-GCGUuuu--CCCGgGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 76728 | 0.67 | 0.870319 |
Target: 5'- gGACGGUcgGGCGgGGAAggacggucGGGCgCUCGGGCg -3' miRNA: 3'- -UUGUUA--CUGCgUUUU--------CCCG-GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 32044 | 0.67 | 0.870319 |
Target: 5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3' miRNA: 3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 91997 | 0.67 | 0.870319 |
Target: 5'- cAGCGAcugcgGGCGCAGcgcccgcGGGCCCgcgccgucugCGGGCa -3' miRNA: 3'- -UUGUUa----CUGCGUUuu-----CCCGGG----------GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 12302 | 0.67 | 0.870319 |
Target: 5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3' miRNA: 3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 72807 | 0.67 | 0.869563 |
Target: 5'- cGCucuuuGUGGCgGCAucGGGGCCauggcgcUCGGGCg -3' miRNA: 3'- uUGu----UACUG-CGUuuUCCCGG-------GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 87577 | 0.67 | 0.862651 |
Target: 5'- -----cGGCGCGugcGcGGCCgCCGGGCu -3' miRNA: 3'- uuguuaCUGCGUuuuC-CCGG-GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 28559 | 0.67 | 0.862651 |
Target: 5'- cGGCGcgGGCGaCAcccgcGAGGGCCuCUGGGa -3' miRNA: 3'- -UUGUuaCUGC-GUu----UUCCCGG-GGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 16832 | 0.67 | 0.862651 |
Target: 5'- -uCGGUGGCGCGGGcaucGGGGCggcgCUCGaGGCg -3' miRNA: 3'- uuGUUACUGCGUUU----UCCCG----GGGC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 134857 | 0.67 | 0.870319 |
Target: 5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3' miRNA: 3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 14457 | 0.67 | 0.862651 |
Target: 5'- uGCGcgGcCGCGGccucuGGGUCuCCGGGCu -3' miRNA: 3'- uUGUuaCuGCGUUuu---CCCGG-GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 131372 | 0.67 | 0.862651 |
Target: 5'- cGGCGcgGGCGaCAcccgcGAGGGCCuCUGGGa -3' miRNA: 3'- -UUGUuaCUGC-GUu----UUCCCGG-GGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 58511 | 0.67 | 0.870319 |
Target: 5'- ---uGUGGCGC---GGGGCgCCCGaGGUa -3' miRNA: 3'- uuguUACUGCGuuuUCCCG-GGGC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 49048 | 0.67 | 0.870319 |
Target: 5'- --uGGUGGCGCGcagcucacGGCCgCGGGCg -3' miRNA: 3'- uugUUACUGCGUuuuc----CCGGgGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 124603 | 0.68 | 0.803256 |
Target: 5'- cGGCcg-GGCGC----GGGuCCCCGGGCc -3' miRNA: 3'- -UUGuuaCUGCGuuuuCCC-GGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 126217 | 0.68 | 0.829859 |
Target: 5'- gAGCuca-ACGCGGAGGcGGCCCCcuGGCg -3' miRNA: 3'- -UUGuuacUGCGUUUUC-CCGGGGc-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 85920 | 0.68 | 0.829859 |
Target: 5'- cGCA--GACGUAcacGAAgcccgcGGGCCCCGGcGCg -3' miRNA: 3'- uUGUuaCUGCGU---UUU------CCCGGGGCC-CG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 125076 | 0.68 | 0.829859 |
Target: 5'- cGGCGG-GGCGCu---GGGCCCgCGcGGCc -3' miRNA: 3'- -UUGUUaCUGCGuuuuCCCGGG-GC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 89538 | 0.68 | 0.79405 |
Target: 5'- cGGCAGcGACGgguCAGAuuGGCCCgCGGGCc -3' miRNA: 3'- -UUGUUaCUGC---GUUUucCCGGG-GCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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