Results 21 - 40 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6603 | 3' | -55.1 | NC_001847.1 | + | 104885 | 0.76 | 0.396356 |
Target: 5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3' miRNA: 3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 106786 | 0.76 | 0.354459 |
Target: 5'- cGCGAgGGCGCc--GGGGgCCCGGGCg -3' miRNA: 3'- uUGUUaCUGCGuuuUCCCgGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 2072 | 0.76 | 0.396356 |
Target: 5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3' miRNA: 3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 8105 | 0.75 | 0.413984 |
Target: 5'- cGACGcgGcgccaGCGCAGGcgcGGGGCCCCagGGGCg -3' miRNA: 3'- -UUGUuaC-----UGCGUUU---UCCCGGGG--CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 20642 | 0.75 | 0.40511 |
Target: 5'- cAGCGA-GGCGcCAAAGGGGCUCagcaGGGCg -3' miRNA: 3'- -UUGUUaCUGC-GUUUUCCCGGGg---CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 114286 | 0.75 | 0.40511 |
Target: 5'- cGACGAUGugGCA--GGGGCguucuugCCGGGCc -3' miRNA: 3'- -UUGUUACugCGUuuUCCCGg------GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 13237 | 0.75 | 0.40511 |
Target: 5'- cGCGAUGGC-CAGcGGGGCCaCgCGGGCg -3' miRNA: 3'- uUGUUACUGcGUUuUCCCGG-G-GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 22631 | 0.74 | 0.479276 |
Target: 5'- cGCAG-GGCGCGuccggGGAGGgcgggcuuGCCCCGGGCg -3' miRNA: 3'- uUGUUaCUGCGU-----UUUCC--------CGGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 70362 | 0.74 | 0.479276 |
Target: 5'- gAACAA-GA-GCGAGGGGGCgCCgGGGCg -3' miRNA: 3'- -UUGUUaCUgCGUUUUCCCG-GGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 116452 | 0.74 | 0.498849 |
Target: 5'- uGGCGGUGACGCGGGccgugcugcGGGGCCUCGcGUa -3' miRNA: 3'- -UUGUUACUGCGUUU---------UCCCGGGGCcCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 88248 | 0.74 | 0.489016 |
Target: 5'- -----cGGCGCGGcgcGGGGCgCCGGGCg -3' miRNA: 3'- uuguuaCUGCGUUu--UCCCGgGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 125444 | 0.74 | 0.479276 |
Target: 5'- cGCAG-GGCGCGuccggGGAGGgcgggcuuGCCCCGGGCg -3' miRNA: 3'- uUGUUaCUGCGU-----UUUCC--------CGGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 115519 | 0.73 | 0.50877 |
Target: 5'- cGCGccGACGCc---GGcGCCCCGGGCc -3' miRNA: 3'- uUGUuaCUGCGuuuuCC-CGGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 90745 | 0.73 | 0.528851 |
Target: 5'- -----cGGCGCGuggccGGGCCCCGGGa -3' miRNA: 3'- uuguuaCUGCGUuuu--CCCGGGGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 10005 | 0.73 | 0.50877 |
Target: 5'- cGGCAAUu-CGCAuccucgugugcGAGGGCUCCGGGCu -3' miRNA: 3'- -UUGUUAcuGCGUu----------UUCCCGGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 108078 | 0.73 | 0.528851 |
Target: 5'- cGCGGUGcCGCccGGGGGGCUgCGGGCc -3' miRNA: 3'- uUGUUACuGCGu-UUUCCCGGgGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 112045 | 0.73 | 0.50877 |
Target: 5'- cGCGGUGGCGCGcgcgggcuacguAGAGGGCgCCCucGGCg -3' miRNA: 3'- uUGUUACUGCGU------------UUUCCCG-GGGc-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 102686 | 0.73 | 0.539001 |
Target: 5'- gGGCGG-GGCGgGGGcAGGGCgCCGGGCg -3' miRNA: 3'- -UUGUUaCUGCgUUU-UCCCGgGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 66229 | 0.73 | 0.548193 |
Target: 5'- gGGCGc--GCGCAAAAGGGCUgcacucuCCGGGCc -3' miRNA: 3'- -UUGUuacUGCGUUUUCCCGG-------GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 8862 | 0.73 | 0.528851 |
Target: 5'- uGCugcUGGCGCAAuuGGGCCCCaGaGCg -3' miRNA: 3'- uUGuu-ACUGCGUUuuCCCGGGGcC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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