Results 81 - 100 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6603 | 3' | -55.1 | NC_001847.1 | + | 72029 | 0.7 | 0.72585 |
Target: 5'- cGACccGUG-CGCGGcGGcGGCCCCGGGg -3' miRNA: 3'- -UUGu-UACuGCGUUuUC-CCGGGGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 115274 | 0.7 | 0.72585 |
Target: 5'- uGGCGGUGGCGggcuaAGccGGcGCCCCcGGGCg -3' miRNA: 3'- -UUGUUACUGCg----UUuuCC-CGGGG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 43232 | 0.7 | 0.72585 |
Target: 5'- -cCGGUGGCGguG-GGGGCgCgCGGGCg -3' miRNA: 3'- uuGUUACUGCguUuUCCCG-GgGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 78071 | 0.7 | 0.72585 |
Target: 5'- cACGAcGGCGCAGGAguccGGGCggcggCCGGGCu -3' miRNA: 3'- uUGUUaCUGCGUUUU----CCCGg----GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 90305 | 0.7 | 0.695149 |
Target: 5'- cGGCGAgcGCGCGuucgguGGGGCCgCCGGGg -3' miRNA: 3'- -UUGUUacUGCGUuu----UCCCGG-GGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 33562 | 0.7 | 0.695149 |
Target: 5'- -----aGGCGCAcgcGGGGGGCgucuggcgcggCCCGGGCu -3' miRNA: 3'- uuguuaCUGCGU---UUUCCCG-----------GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 55705 | 0.7 | 0.705451 |
Target: 5'- uGCAAacGGCGCGAGGGGGCgacagagCGGGCa -3' miRNA: 3'- uUGUUa-CUGCGUUUUCCCGgg-----GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 103219 | 0.7 | 0.72585 |
Target: 5'- -----cGAC-CGAgaccGAGGGCCCgGGGCg -3' miRNA: 3'- uuguuaCUGcGUU----UUCCCGGGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 2270 | 0.69 | 0.732914 |
Target: 5'- cGGCAcgcGGCGgAAGccgccgucggcggcGGGGCCgCCGGGCg -3' miRNA: 3'- -UUGUua-CUGCgUUU--------------UCCCGG-GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 48174 | 0.69 | 0.735927 |
Target: 5'- uAGCAGcaugGGCGUGAAcacGGGCUCgGGGCg -3' miRNA: 3'- -UUGUUa---CUGCGUUUu--CCCGGGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 118500 | 0.69 | 0.735927 |
Target: 5'- -----aGGCGC---GGGGCCCCGacGGCa -3' miRNA: 3'- uuguuaCUGCGuuuUCCCGGGGC--CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 13387 | 0.69 | 0.735927 |
Target: 5'- cACGuccgGGCGCGccgcGGGCCCUGGGa -3' miRNA: 3'- uUGUua--CUGCGUuuu-CCCGGGGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 28786 | 0.69 | 0.735927 |
Target: 5'- uGCAGcGGCGCGugcAGGGCUgCCGGGg -3' miRNA: 3'- uUGUUaCUGCGUuu-UCCCGG-GGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 216 | 0.69 | 0.74591 |
Target: 5'- -----cGGCGCccGGGGGCccgagCCCGGGCc -3' miRNA: 3'- uuguuaCUGCGuuUUCCCG-----GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 3700 | 0.69 | 0.74591 |
Target: 5'- gAACAcgGcCGC----GGGCCCCGcGGCc -3' miRNA: 3'- -UUGUuaCuGCGuuuuCCCGGGGC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 25951 | 0.69 | 0.74591 |
Target: 5'- gAGCGGcuagGGC-CAAAGGGGgCCgCGGGCg -3' miRNA: 3'- -UUGUUa---CUGcGUUUUCCCgGG-GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 76695 | 0.69 | 0.74591 |
Target: 5'- uGCuuuGUGGCGCGGGAGGaggcGCgCCGGGa -3' miRNA: 3'- uUGu--UACUGCGUUUUCC----CGgGGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 49563 | 0.69 | 0.752836 |
Target: 5'- uACAAUG-CGCGGAaccucucggccgacGGcGGCgCCUGGGCg -3' miRNA: 3'- uUGUUACuGCGUUU--------------UC-CCG-GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 75490 | 0.69 | 0.779006 |
Target: 5'- cACGGgcgGGCGCGAgcGGGCUCaaaagagcgcggucgCGGGCg -3' miRNA: 3'- uUGUUa--CUGCGUUuuCCCGGG---------------GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 96415 | 0.69 | 0.755787 |
Target: 5'- cGGCAAUGGCggggccggcgGCAGgcGcGGCCCCGGagGCa -3' miRNA: 3'- -UUGUUACUG----------CGUUuuC-CCGGGGCC--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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