miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 68824 1.1 0.002168
Target:  5'- gAACAAUGACGCAAAAGGGCCCCGGGCg -3'
miRNA:   3'- -UUGUUACUGCGUUUUCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41508 0.86 0.09198
Target:  5'- gGACAucAUGGCGCGAAAGGGCCgUGGGUc -3'
miRNA:   3'- -UUGU--UACUGCGUUUUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116401 0.83 0.14892
Target:  5'- cGGCGGcGGCGCucu-GGGCCCCGGGCc -3'
miRNA:   3'- -UUGUUaCUGCGuuuuCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 62906 0.82 0.161095
Target:  5'- --gGGUGGCGCGGGugcucGGGGCCCgCGGGCg -3'
miRNA:   3'- uugUUACUGCGUUU-----UCCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 107042 0.79 0.260697
Target:  5'- cGGCGGUGuCGCGcgc-GGCCCCGGGCa -3'
miRNA:   3'- -UUGUUACuGCGUuuucCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 134953 0.78 0.280383
Target:  5'- gGGCGggGGCGgGGgcGGGGGCCCCGGGg -3'
miRNA:   3'- -UUGUuaCUGCgUU--UUCCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 32140 0.78 0.280384
Target:  5'- gGGCGggGGCGgGGgcGGGGGCCCCGGGg -3'
miRNA:   3'- -UUGUuaCUGCgUU--UUCCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 60826 0.78 0.294153
Target:  5'- --uGAUGGCGC-GAGGGGCgCCCGcGGCg -3'
miRNA:   3'- uugUUACUGCGuUUUCCCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 31962 0.78 0.294153
Target:  5'- cGCGcgGcGCGCGGGGcGGGCCCCGGGg -3'
miRNA:   3'- uUGUuaC-UGCGUUUU-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 134775 0.78 0.294153
Target:  5'- cGCGcgGcGCGCGGGGcGGGCCCCGGGg -3'
miRNA:   3'- uUGUuaC-UGCGUUUU-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 31265 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 134078 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 93293 0.77 0.315786
Target:  5'- uGCAAUGugGCGAGGGGgacgugccccaGCCCUGGGa -3'
miRNA:   3'- uUGUUACugCGUUUUCC-----------CGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 5015 0.77 0.315786
Target:  5'- cGGCGGcGGCGCGGAGGGGaagCUCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGUUUUCCCg--GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 107828 0.77 0.315786
Target:  5'- cGGCGGcGGCGCGGAGGGGaagCUCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGUUUUCCCg--GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41614 0.77 0.346464
Target:  5'- uAACccgGGCGCuccGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGuuaCUGCGuuuUCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 106786 0.76 0.354459
Target:  5'- cGCGAgGGCGCc--GGGGgCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGuuuUCCCgGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32096 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 134909 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 51969 0.76 0.379218
Target:  5'- cGGCAGUGAUGCAcuGGGuGCgCCGGcGCa -3'
miRNA:   3'- -UUGUUACUGCGUuuUCC-CGgGGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.