miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 43118 0.76 0.379218
Target:  5'- cGGCGGUGccCGCAGAcggcgcGGGCCCgCGGGCg -3'
miRNA:   3'- -UUGUUACu-GCGUUUu-----CCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 104885 0.76 0.396356
Target:  5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 2072 0.76 0.396356
Target:  5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 114286 0.75 0.40511
Target:  5'- cGACGAUGugGCA--GGGGCguucuugCCGGGCc -3'
miRNA:   3'- -UUGUUACugCGUuuUCCCGg------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 20642 0.75 0.40511
Target:  5'- cAGCGA-GGCGcCAAAGGGGCUCagcaGGGCg -3'
miRNA:   3'- -UUGUUaCUGC-GUUUUCCCGGGg---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 13237 0.75 0.40511
Target:  5'- cGCGAUGGC-CAGcGGGGCCaCgCGGGCg -3'
miRNA:   3'- uUGUUACUGcGUUuUCCCGG-G-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 8105 0.75 0.413984
Target:  5'- cGACGcgGcgccaGCGCAGGcgcGGGGCCCCagGGGCg -3'
miRNA:   3'- -UUGUuaC-----UGCGUUU---UCCCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 70362 0.74 0.479276
Target:  5'- gAACAA-GA-GCGAGGGGGCgCCgGGGCg -3'
miRNA:   3'- -UUGUUaCUgCGUUUUCCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 125444 0.74 0.479276
Target:  5'- cGCAG-GGCGCGuccggGGAGGgcgggcuuGCCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGU-----UUUCC--------CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 22631 0.74 0.479276
Target:  5'- cGCAG-GGCGCGuccggGGAGGgcgggcuuGCCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGU-----UUUCC--------CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 88248 0.74 0.489016
Target:  5'- -----cGGCGCGGcgcGGGGCgCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUu--UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116452 0.74 0.498849
Target:  5'- uGGCGGUGACGCGGGccgugcugcGGGGCCUCGcGUa -3'
miRNA:   3'- -UUGUUACUGCGUUU---------UCCCGGGGCcCG- -5'
6603 3' -55.1 NC_001847.1 + 112045 0.73 0.50877
Target:  5'- cGCGGUGGCGCGcgcgggcuacguAGAGGGCgCCCucGGCg -3'
miRNA:   3'- uUGUUACUGCGU------------UUUCCCG-GGGc-CCG- -5'
6603 3' -55.1 NC_001847.1 + 115519 0.73 0.50877
Target:  5'- cGCGccGACGCc---GGcGCCCCGGGCc -3'
miRNA:   3'- uUGUuaCUGCGuuuuCC-CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 10005 0.73 0.50877
Target:  5'- cGGCAAUu-CGCAuccucgugugcGAGGGCUCCGGGCu -3'
miRNA:   3'- -UUGUUAcuGCGUu----------UUCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 8862 0.73 0.528851
Target:  5'- uGCugcUGGCGCAAuuGGGCCCCaGaGCg -3'
miRNA:   3'- uUGuu-ACUGCGUUuuCCCGGGGcC-CG- -5'
6603 3' -55.1 NC_001847.1 + 90745 0.73 0.528851
Target:  5'- -----cGGCGCGuggccGGGCCCCGGGa -3'
miRNA:   3'- uuguuaCUGCGUuuu--CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 108078 0.73 0.528851
Target:  5'- cGCGGUGcCGCccGGGGGGCUgCGGGCc -3'
miRNA:   3'- uUGUUACuGCGu-UUUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102686 0.73 0.539001
Target:  5'- gGGCGG-GGCGgGGGcAGGGCgCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCgUUU-UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49200 0.73 0.539001
Target:  5'- aGACGGUagcccuCGCGccGGGGCCCgCGGGCu -3'
miRNA:   3'- -UUGUUAcu----GCGUuuUCCCGGG-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.