miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 66229 0.73 0.548193
Target:  5'- gGGCGc--GCGCAAAAGGGCUgcacucuCCGGGCc -3'
miRNA:   3'- -UUGUuacUGCGUUUUCCCGG-------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 129351 0.72 0.559492
Target:  5'- cGCAA--GCGCGGugccGGGCCCgGGGCu -3'
miRNA:   3'- uUGUUacUGCGUUuu--CCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 64203 0.72 0.569821
Target:  5'- gAACAu--GCGCGGGucGGGGUgCCCGGGCg -3'
miRNA:   3'- -UUGUuacUGCGUUU--UCCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 36064 0.72 0.569821
Target:  5'- aGACAGgccccaGCAcgaaGAGGcGGCCCCGGGCc -3'
miRNA:   3'- -UUGUUacug--CGU----UUUC-CCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 22117 0.72 0.580195
Target:  5'- cGACAGcgGGCGCGcccuGGGCCCgGcGGCg -3'
miRNA:   3'- -UUGUUa-CUGCGUuuu-CCCGGGgC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 124930 0.72 0.580195
Target:  5'- cGACAGcgGGCGCGcccuGGGCCCgGcGGCg -3'
miRNA:   3'- -UUGUUa-CUGCGUuuu-CCCGGGgC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 103574 0.72 0.580195
Target:  5'- gAGCuagGuACGCGuAGAGGGCCCUcggGGGCa -3'
miRNA:   3'- -UUGuuaC-UGCGU-UUUCCCGGGG---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 103492 0.72 0.580195
Target:  5'- -----gGGCGCGc--GGGCUCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGUuuuCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 35567 0.72 0.601054
Target:  5'- -----cGAcCGCGAcGAGGGCgCCGGGCu -3'
miRNA:   3'- uuguuaCU-GCGUU-UUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 57885 0.72 0.601054
Target:  5'- gGACGAcgcccggGGCGCAAcc--GCCCCGGGCg -3'
miRNA:   3'- -UUGUUa------CUGCGUUuuccCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 7735 0.72 0.601054
Target:  5'- gGGCGcgGGCGCGGAGGcGGCggCCaGGGCa -3'
miRNA:   3'- -UUGUuaCUGCGUUUUC-CCG--GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49994 0.72 0.608381
Target:  5'- cGCGAgagGAgcccgcgcgcccacCGCcugcuGGGCCCCGGGCg -3'
miRNA:   3'- uUGUUa--CU--------------GCGuuuu-CCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 69384 0.72 0.611524
Target:  5'- cGGCGGUGGCGCugccGGcGGCCUuugCGGGCc -3'
miRNA:   3'- -UUGUUACUGCGuuu-UC-CCGGG---GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 79422 0.72 0.611524
Target:  5'- cACcGUGGCGCccGAGGGCggCGGGCa -3'
miRNA:   3'- uUGuUACUGCGuuUUCCCGggGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 54554 0.71 0.62201
Target:  5'- cGGCGGgggcGGCGCGGAGGacgacGGCCCCgcGGGCu -3'
miRNA:   3'- -UUGUUa---CUGCGUUUUC-----CCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 44927 0.71 0.632503
Target:  5'- cGACcGUGuCGCu--GGGGCgCUCGGGCu -3'
miRNA:   3'- -UUGuUACuGCGuuuUCCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 129302 0.71 0.632503
Target:  5'- gGGCGGgccUGGUGCAAGGcGGGCCugCCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUUUU-CCCGG--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 26489 0.71 0.632503
Target:  5'- gGGCGGgccUGGUGCAAGGcGGGCCugCCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUUUU-CCCGG--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 36486 0.71 0.632503
Target:  5'- uGCGcgGGCGCGu-GGcGGCCCUucuGGGCg -3'
miRNA:   3'- uUGUuaCUGCGUuuUC-CCGGGG---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 46906 0.71 0.632503
Target:  5'- cAGCGAggcuucggggGGCGCGucgggcccGGGCUCCGGGCc -3'
miRNA:   3'- -UUGUUa---------CUGCGUuuu-----CCCGGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.