miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 46906 0.71 0.632503
Target:  5'- cAGCGAggcuucggggGGCGCGucgggcccGGGCUCCGGGCc -3'
miRNA:   3'- -UUGUUa---------CUGCGUuuu-----CCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 21752 0.71 0.642997
Target:  5'- cGCGc--GCGCGGGGGGGCCgCCGGcGCc -3'
miRNA:   3'- uUGUuacUGCGUUUUCCCGG-GGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 124565 0.71 0.642997
Target:  5'- cGCGc--GCGCGGGGGGGCCgCCGGcGCc -3'
miRNA:   3'- uUGUuacUGCGUUUUCCCGG-GGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 30481 0.71 0.653482
Target:  5'- cGCuggGACGCGAucGgcgcGGCCCuCGGGCg -3'
miRNA:   3'- uUGuuaCUGCGUUuuC----CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 61775 0.71 0.653482
Target:  5'- uAACGGUGGCGCGGugcGGGUgggCCGGGUc -3'
miRNA:   3'- -UUGUUACUGCGUUuu-CCCGg--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 66674 0.71 0.653482
Target:  5'- uGCGcccGCGCGGcGGGGCCCCGGccGCg -3'
miRNA:   3'- uUGUuacUGCGUUuUCCCGGGGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 91398 0.71 0.653482
Target:  5'- gGACGAUGACGUGAAcgucGGcGGCCCUgcuGGGa -3'
miRNA:   3'- -UUGUUACUGCGUUU----UC-CCGGGG---CCCg -5'
6603 3' -55.1 NC_001847.1 + 69524 0.71 0.663948
Target:  5'- ---uGUGACGuCAucGGGuuuuucgcGCCCCGGGCg -3'
miRNA:   3'- uuguUACUGC-GUuuUCC--------CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 39628 0.71 0.663948
Target:  5'- gGGCAAgccUGGCGCGcccgccaGGCCCaCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUuuuc---CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 96193 0.7 0.674388
Target:  5'- cGCcAUGGCGCucgcGGcCCCCGGGCc -3'
miRNA:   3'- uUGuUACUGCGuuuuCCcGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 114894 0.7 0.674388
Target:  5'- uAGCAcAUGGCGCGcgcGGGGGcgaGCCCCugGGGCa -3'
miRNA:   3'- -UUGU-UACUGCGU---UUUCC---CGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 15296 0.7 0.683753
Target:  5'- cGACGcUGACcggcacgGCGucGGGGGCCgCGGGCg -3'
miRNA:   3'- -UUGUuACUG-------CGUu-UUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 33879 0.7 0.684791
Target:  5'- gGGCAGUGAgGagggaCGAGGGGaGCgCCGGGCc -3'
miRNA:   3'- -UUGUUACUgC-----GUUUUCC-CGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32342 0.7 0.688941
Target:  5'- -----cGGCGCGGAGGGGgCCCagcccccgcgcggggGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUUUCCCgGGG---------------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 69326 0.7 0.695149
Target:  5'- -----gGGCGC----GGGCCUCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 33562 0.7 0.695149
Target:  5'- -----aGGCGCAcgcGGGGGGCgucuggcgcggCCCGGGCu -3'
miRNA:   3'- uuguuaCUGCGU---UUUCCCG-----------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 90305 0.7 0.695149
Target:  5'- cGGCGAgcGCGCGuucgguGGGGCCgCCGGGg -3'
miRNA:   3'- -UUGUUacUGCGUuu----UCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 55705 0.7 0.705451
Target:  5'- uGCAAacGGCGCGAGGGGGCgacagagCGGGCa -3'
miRNA:   3'- uUGUUa-CUGCGUUUUCCCGgg-----GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 79596 0.7 0.712624
Target:  5'- gGGCGggGGCGCcGGGGGcguugucgccggucGCCCCGcGGCg -3'
miRNA:   3'- -UUGUuaCUGCGuUUUCC--------------CGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 88369 0.7 0.715688
Target:  5'- cGCGcgGGCGCGGcGGaccGGCCCCGcgcGGCg -3'
miRNA:   3'- uUGUuaCUGCGUUuUC---CCGGGGC---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.