miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 71440 0.7 0.715688
Target:  5'- uGCAcacGACG-AGGuuGGCCCCGGGCg -3'
miRNA:   3'- uUGUua-CUGCgUUUucCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95778 0.7 0.72585
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCg -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 103219 0.7 0.72585
Target:  5'- -----cGAC-CGAgaccGAGGGCCCgGGGCg -3'
miRNA:   3'- uuguuaCUGcGUU----UUCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 78071 0.7 0.72585
Target:  5'- cACGAcGGCGCAGGAguccGGGCggcggCCGGGCu -3'
miRNA:   3'- uUGUUaCUGCGUUUU----CCCGg----GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43232 0.7 0.72585
Target:  5'- -cCGGUGGCGguG-GGGGCgCgCGGGCg -3'
miRNA:   3'- uuGUUACUGCguUuUCCCG-GgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 115274 0.7 0.72585
Target:  5'- uGGCGGUGGCGggcuaAGccGGcGCCCCcGGGCg -3'
miRNA:   3'- -UUGUUACUGCg----UUuuCC-CGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 72029 0.7 0.72585
Target:  5'- cGACccGUG-CGCGGcGGcGGCCCCGGGg -3'
miRNA:   3'- -UUGu-UACuGCGUUuUC-CCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 406 0.7 0.72585
Target:  5'- -----cGAC-CGAgaccGAGGGCCCgGGGCg -3'
miRNA:   3'- uuguuaCUGcGUU----UUCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 2270 0.69 0.732914
Target:  5'- cGGCAcgcGGCGgAAGccgccgucggcggcGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGUua-CUGCgUUU--------------UCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 105083 0.69 0.732914
Target:  5'- cGGCAcgcGGCGgAAGccgccgucggcggcGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGUua-CUGCgUUU--------------UCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 13387 0.69 0.735927
Target:  5'- cACGuccgGGCGCGccgcGGGCCCUGGGa -3'
miRNA:   3'- uUGUua--CUGCGUuuu-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 131599 0.69 0.735927
Target:  5'- uGCAGcGGCGCGugcAGGGCUgCCGGGg -3'
miRNA:   3'- uUGUUaCUGCGUuu-UCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 48174 0.69 0.735927
Target:  5'- uAGCAGcaugGGCGUGAAcacGGGCUCgGGGCg -3'
miRNA:   3'- -UUGUUa---CUGCGUUUu--CCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 28786 0.69 0.735927
Target:  5'- uGCAGcGGCGCGugcAGGGCUgCCGGGg -3'
miRNA:   3'- uUGUUaCUGCGUuu-UCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 118500 0.69 0.735927
Target:  5'- -----aGGCGC---GGGGCCCCGacGGCa -3'
miRNA:   3'- uuguuaCUGCGuuuUCCCGGGGC--CCG- -5'
6603 3' -55.1 NC_001847.1 + 89707 0.69 0.74591
Target:  5'- -----cGcCGCGAcGGGcGCCCUGGGCu -3'
miRNA:   3'- uuguuaCuGCGUUuUCC-CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 76695 0.69 0.74591
Target:  5'- uGCuuuGUGGCGCGGGAGGaggcGCgCCGGGa -3'
miRNA:   3'- uUGu--UACUGCGUUUUCC----CGgGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 216 0.69 0.74591
Target:  5'- -----cGGCGCccGGGGGCccgagCCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGuuUUCCCG-----GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 3700 0.69 0.74591
Target:  5'- gAACAcgGcCGC----GGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUuaCuGCGuuuuCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 25951 0.69 0.74591
Target:  5'- gAGCGGcuagGGC-CAAAGGGGgCCgCGGGCg -3'
miRNA:   3'- -UUGUUa---CUGcGUUUUCCCgGG-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.