miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 103029 0.69 0.74591
Target:  5'- -----cGGCGCccGGGGGCccgagCCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGuuUUCCCG-----GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 3700 0.69 0.74591
Target:  5'- gAACAcgGcCGC----GGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUuaCuGCGuuuuCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 25951 0.69 0.74591
Target:  5'- gAGCGGcuagGGC-CAAAGGGGgCCgCGGGCg -3'
miRNA:   3'- -UUGUUa---CUGcGUUUUCCCgGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49563 0.69 0.752836
Target:  5'- uACAAUG-CGCGGAaccucucggccgacGGcGGCgCCUGGGCg -3'
miRNA:   3'- uUGUUACuGCGUUU--------------UC-CCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 96415 0.69 0.755787
Target:  5'- cGGCAAUGGCggggccggcgGCAGgcGcGGCCCCGGagGCa -3'
miRNA:   3'- -UUGUUACUG----------CGUUuuC-CCGGGGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 121553 0.69 0.755787
Target:  5'- gAACGGcGcACGCGAGAGGGUUCgaaaaGGGCa -3'
miRNA:   3'- -UUGUUaC-UGCGUUUUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 77452 0.69 0.76555
Target:  5'- gAGCAGUcGGCGgGcuGGGGCgggcgCCGGGCg -3'
miRNA:   3'- -UUGUUA-CUGCgUuuUCCCGg----GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 88803 0.69 0.775188
Target:  5'- -cCGAUGcCGCcGAcGcGGCCCgCGGGCg -3'
miRNA:   3'- uuGUUACuGCGuUUuC-CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 61030 0.69 0.775188
Target:  5'- cACAuccccgGGCGCGGcc--GCCCCGGGCa -3'
miRNA:   3'- uUGUua----CUGCGUUuuccCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 61475 0.69 0.775188
Target:  5'- -uCGAUGGCGCGGGccAGGGCgUCCaGGUa -3'
miRNA:   3'- uuGUUACUGCGUUU--UCCCG-GGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 75490 0.69 0.779006
Target:  5'- cACGGgcgGGCGCGAgcGGGCUCaaaagagcgcggucgCGGGCg -3'
miRNA:   3'- uUGUUa--CUGCGUUuuCCCGGG---------------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 34013 0.68 0.781855
Target:  5'- cGGCGGUGcugggcaccGCGCugggccaggcgauGGGCCCCGcGGCg -3'
miRNA:   3'- -UUGUUAC---------UGCGuuuu---------CCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 51373 0.68 0.784691
Target:  5'- uGACGGUGACGCucgcGGaGGCCgCGGucGCg -3'
miRNA:   3'- -UUGUUACUGCGuuu-UC-CCGGgGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 80397 0.68 0.784691
Target:  5'- --uGGUGGCGCuuGGGGGCCgCaacGGCa -3'
miRNA:   3'- uugUUACUGCGuuUUCCCGGgGc--CCG- -5'
6603 3' -55.1 NC_001847.1 + 130611 0.68 0.784691
Target:  5'- -----aGACGCG--GGGGCCaCCgaGGGCg -3'
miRNA:   3'- uuguuaCUGCGUuuUCCCGG-GG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 90772 0.68 0.784691
Target:  5'- gAACGccuGCGCGgcGAGGGGCCCguucagcagcccCGGGCg -3'
miRNA:   3'- -UUGUuacUGCGU--UUUCCCGGG------------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 16936 0.68 0.784691
Target:  5'- cAGCGAUG-CGUuucgcAGGGCCucguaagagggCCGGGCg -3'
miRNA:   3'- -UUGUUACuGCGuuu--UCCCGG-----------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 115733 0.68 0.784691
Target:  5'- -cCAcgGGCGCGcuGGuGGCCauGGGCa -3'
miRNA:   3'- uuGUuaCUGCGUuuUC-CCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 27798 0.68 0.784691
Target:  5'- -----aGACGCG--GGGGCCaCCgaGGGCg -3'
miRNA:   3'- uuguuaCUGCGUuuUCCCGG-GG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 116565 0.68 0.793121
Target:  5'- -cUAAUGGCGCAcguGGGcaucugcGCUCUGGGCg -3'
miRNA:   3'- uuGUUACUGCGUuu-UCC-------CGGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.