miRNA display CGI


Results 121 - 140 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 54521 0.68 0.79405
Target:  5'- gGGCGGUGGgGC---GGGGCCguCCGGGg -3'
miRNA:   3'- -UUGUUACUgCGuuuUCCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 89538 0.68 0.79405
Target:  5'- cGGCAGcGACGgguCAGAuuGGCCCgCGGGCc -3'
miRNA:   3'- -UUGUUaCUGC---GUUUucCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 91872 0.68 0.79405
Target:  5'- cGCGcgGcguCGCAGcAGGuGCCCCccGGGCg -3'
miRNA:   3'- uUGUuaCu--GCGUUuUCC-CGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 54570 0.68 0.800511
Target:  5'- cGCGcccGUGACGCGcgcgagcgauguucGGGGGcGCCgUGGGCg -3'
miRNA:   3'- uUGU---UACUGCGU--------------UUUCC-CGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 9948 0.68 0.802343
Target:  5'- cGCGGcccgGGCGCcuucugccccgagGAcuGGGCCCCGaGGCg -3'
miRNA:   3'- uUGUUa---CUGCG-------------UUuuCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 62492 0.68 0.802343
Target:  5'- cACGGUGGCGUAGuaguuGGcGCCCacaaagugcggcaCGGGCg -3'
miRNA:   3'- uUGUUACUGCGUUuu---CC-CGGG-------------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 124603 0.68 0.803256
Target:  5'- cGGCcg-GGCGC----GGGuCCCCGGGCc -3'
miRNA:   3'- -UUGuuaCUGCGuuuuCCC-GGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 62009 0.68 0.803256
Target:  5'- -----cGGCGC---GGGGCCCUGcGGCc -3'
miRNA:   3'- uuguuaCUGCGuuuUCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 78281 0.68 0.803256
Target:  5'- ----uUGGcCGCGcccGGGCCgCCGGGCg -3'
miRNA:   3'- uuguuACU-GCGUuuuCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 21790 0.68 0.803256
Target:  5'- cGGCcg-GGCGC----GGGuCCCCGGGCc -3'
miRNA:   3'- -UUGuuaCUGCGuuuuCCC-GGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 89642 0.68 0.803256
Target:  5'- cGGCGGcGGCGCcc----GCCCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGuuuuccCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 56583 0.68 0.803256
Target:  5'- aGAgGGUGACGCGAAcGGcaGCgCCGGGa -3'
miRNA:   3'- -UUgUUACUGCGUUUuCC--CGgGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 63540 0.68 0.803256
Target:  5'- cGCugcUGGCGCcgccuGGGCCggcgCCGGGCg -3'
miRNA:   3'- uUGuu-ACUGCGuuuu-CCCGG----GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 28306 0.68 0.812299
Target:  5'- aAGCGGcccCGCGAGAggcGGGCgCCGGGCc -3'
miRNA:   3'- -UUGUUacuGCGUUUU---CCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95643 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95670 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 50043 0.68 0.812299
Target:  5'- cGCGG-GGCGCGGuGGcGGCCgCGGGUc -3'
miRNA:   3'- uUGUUaCUGCGUUuUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 57679 0.68 0.812299
Target:  5'- gGGCAcgGugGUGcuGGGcGCCgCGGGUg -3'
miRNA:   3'- -UUGUuaCugCGUuuUCC-CGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95697 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95724 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.