miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 28345 0.66 0.884977
Target:  5'- cGCGggGccGCGCGcccGGGCCCCcGGCg -3'
miRNA:   3'- uUGUuaC--UGCGUuuuCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 32315 0.66 0.884977
Target:  5'- -cCGggGuCGC-AGGGGGCCCgCGcGGCg -3'
miRNA:   3'- uuGUuaCuGCGuUUUCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 77255 0.66 0.884977
Target:  5'- -----cGGgGCGGuuGcGCCCCGGGCg -3'
miRNA:   3'- uuguuaCUgCGUUuuCcCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 135128 0.66 0.884977
Target:  5'- -cCGggGuCGC-AGGGGGCCCgCGcGGCg -3'
miRNA:   3'- uuGUuaCuGCGuUUUCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 102027 0.66 0.884977
Target:  5'- -----cGcCGCAGGuacGGGGCCCCcGGCc -3'
miRNA:   3'- uuguuaCuGCGUUU---UCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 116764 0.66 0.884977
Target:  5'- aGGCGAgGACGCcGAGgcaucGGGCCCgccgacgaucuUGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGuUUU-----CCCGGG-----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 48378 0.66 0.884977
Target:  5'- cGACcGUGGCGCcgccgGGccGGGCCUCGGcgGCa -3'
miRNA:   3'- -UUGuUACUGCG-----UUuuCCCGGGGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 15733 0.66 0.884977
Target:  5'- -uCGAUG-CGCAAccugGAGGGCgCCuaugccgacgCGGGCg -3'
miRNA:   3'- uuGUUACuGCGUU----UUCCCG-GG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 34808 0.66 0.884977
Target:  5'- cGCGGccgcUGGCGCGGca-GGCCgaCCGGGCg -3'
miRNA:   3'- uUGUU----ACUGCGUUuucCCGG--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 132451 0.66 0.884266
Target:  5'- cGCAAgcuggagGGCGCGGAGGacgagccgaugccGGCCgagccgCCGGGCg -3'
miRNA:   3'- uUGUUa------CUGCGUUUUC-------------CCGG------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 24330 0.66 0.882837
Target:  5'- cGCGcgGGgGCGAuguccaaguggaggGGGGGCCCgagcaGGGCc -3'
miRNA:   3'- uUGUuaCUgCGUU--------------UUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 127143 0.66 0.882837
Target:  5'- cGCGcgGGgGCGAuguccaaguggaggGGGGGCCCgagcaGGGCc -3'
miRNA:   3'- uUGUuaCUgCGUU--------------UUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 135028 0.66 0.880676
Target:  5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3'
miRNA:   3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32215 0.66 0.880676
Target:  5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3'
miRNA:   3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 85145 0.66 0.877763
Target:  5'- aGGCGGUGgGCGCGc--GGGCUCCucucgcggaGGGCg -3'
miRNA:   3'- -UUGUUAC-UGCGUuuuCCCGGGG---------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 123579 0.66 0.877763
Target:  5'- -----cGcCGCGAGcGGGGCCggaCCGGGCu -3'
miRNA:   3'- uuguuaCuGCGUUU-UCCCGG---GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 19489 0.66 0.877763
Target:  5'- cGCAcgGACGCGAAcauGGauGGUCCCGGu- -3'
miRNA:   3'- uUGUuaCUGCGUUU---UC--CCGGGGCCcg -5'
6603 3' -55.1 NC_001847.1 + 13308 0.66 0.877763
Target:  5'- cGCGGUcgucGAgGCAGAcGGGCUCCggcacGGGCg -3'
miRNA:   3'- uUGUUA----CUgCGUUUuCCCGGGG-----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 95751 0.66 0.877763
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCn -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 9041 0.66 0.877763
Target:  5'- cGCGAUGcgGCGCGAGGGGGCaauggacuUuuGGaGCg -3'
miRNA:   3'- uUGUUAC--UGCGUUUUCCCG--------GggCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.