miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 19489 0.66 0.877763
Target:  5'- cGCAcgGACGCGAAcauGGauGGUCCCGGu- -3'
miRNA:   3'- uUGUuaCUGCGUUU---UC--CCGGGGCCcg -5'
6603 3' -55.1 NC_001847.1 + 13308 0.66 0.877763
Target:  5'- cGCGGUcgucGAgGCAGAcGGGCUCCggcacGGGCg -3'
miRNA:   3'- uUGUUA----CUgCGUUUuCCCGGGG-----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 9041 0.66 0.877763
Target:  5'- cGCGAUGcgGCGCGAGGGGGCaauggacuUuuGGaGCg -3'
miRNA:   3'- uUGUUAC--UGCGUUUUCCCG--------GggCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 71792 0.66 0.877763
Target:  5'- cACAGUGcCGCAc--GcGCCCCuGGGCg -3'
miRNA:   3'- uUGUUACuGCGUuuuCcCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 134983 0.66 0.877029
Target:  5'- -cCAA-GACGCAGAAccccGGCCCCccggccgGGGCc -3'
miRNA:   3'- uuGUUaCUGCGUUUUc---CCGGGG-------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 32170 0.66 0.877029
Target:  5'- -cCAA-GACGCAGAAccccGGCCCCccggccgGGGCc -3'
miRNA:   3'- uuGUUaCUGCGUUUUc---CCGGGG-------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 86583 0.66 0.877029
Target:  5'- aGACGGcGGCGCuucguucuuuacgcGGCUCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGuuuuc---------CCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 5361 0.67 0.870319
Target:  5'- -----cGGCGCGGccGGGCCCa-GGCu -3'
miRNA:   3'- uuguuaCUGCGUUuuCCCGGGgcCCG- -5'
6603 3' -55.1 NC_001847.1 + 12302 0.67 0.870319
Target:  5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3'
miRNA:   3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 134857 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 49048 0.67 0.870319
Target:  5'- --uGGUGGCGCGcagcucacGGCCgCGGGCg -3'
miRNA:   3'- uugUUACUGCGUuuuc----CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 76728 0.67 0.870319
Target:  5'- gGACGGUcgGGCGgGGAAggacggucGGGCgCUCGGGCg -3'
miRNA:   3'- -UUGUUA--CUGCgUUUU--------CCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 58511 0.67 0.870319
Target:  5'- ---uGUGGCGC---GGGGCgCCCGaGGUa -3'
miRNA:   3'- uuguUACUGCGuuuUCCCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 91997 0.67 0.870319
Target:  5'- cAGCGAcugcgGGCGCAGcgcccgcGGGCCCgcgccgucugCGGGCa -3'
miRNA:   3'- -UUGUUa----CUGCGUUuu-----CCCGGG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32044 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 72807 0.67 0.869563
Target:  5'- cGCucuuuGUGGCgGCAucGGGGCCauggcgcUCGGGCg -3'
miRNA:   3'- uUGu----UACUG-CGUuuUCCCGG-------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116044 0.67 0.862651
Target:  5'- cGCAcuuuGUGACgGCAGccucGGGCaCCgGGGCg -3'
miRNA:   3'- uUGU----UACUG-CGUUuu--CCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 53355 0.67 0.862651
Target:  5'- -----cGACGCGcugcuGGcGGCCgCGGGCa -3'
miRNA:   3'- uuguuaCUGCGUuu---UC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 14457 0.67 0.862651
Target:  5'- uGCGcgGcCGCGGccucuGGGUCuCCGGGCu -3'
miRNA:   3'- uUGUuaCuGCGUUuu---CCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 22383 0.67 0.862651
Target:  5'- -----cGGgGCAGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUgCGUUUUCC-CGGGgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.