miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 32784 0.67 0.846664
Target:  5'- ----cUGugGgGGGAGGGCCggGGGCg -3'
miRNA:   3'- uuguuACugCgUUUUCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 37019 0.67 0.846664
Target:  5'- cACcGUG-CGgAGcGGGGCgCCGGGCu -3'
miRNA:   3'- uUGuUACuGCgUUuUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43643 0.67 0.846664
Target:  5'- uGCAG-GACGCGcgcGAGGGCU-CGGGUg -3'
miRNA:   3'- uUGUUaCUGCGUu--UUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 16753 0.67 0.846664
Target:  5'- cGACGcUGACGagGAcGGGGCUuccgauuaggCCGGGCg -3'
miRNA:   3'- -UUGUuACUGCg-UUuUCCCGG----------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15111 0.67 0.846664
Target:  5'- gGGCGGU--CGgGGGAGGGCcuaggccgcucaCCCGGGCa -3'
miRNA:   3'- -UUGUUAcuGCgUUUUCCCG------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 2258 0.67 0.838361
Target:  5'- --aGGUGACGCGGc--GGCCCuCGGGa -3'
miRNA:   3'- uugUUACUGCGUUuucCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 74975 0.67 0.838361
Target:  5'- gGACAGcGACGgGGcGGGGCgCCaGGCu -3'
miRNA:   3'- -UUGUUaCUGCgUUuUCCCGgGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 108484 0.67 0.838361
Target:  5'- -----aGGCGCGAAGguGGGCCggCCGGGg -3'
miRNA:   3'- uuguuaCUGCGUUUU--CCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 47841 0.67 0.838361
Target:  5'- -cCAAUGcGCGCAAAucggccGcGGCCgCGGGCc -3'
miRNA:   3'- uuGUUAC-UGCGUUUu-----C-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 50270 0.67 0.838361
Target:  5'- cGCug-GGCGCGuacguGGGCCgccuagCCGGGCu -3'
miRNA:   3'- uUGuuaCUGCGUuuu--CCCGG------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 83467 0.67 0.838361
Target:  5'- -----gGGCGUc---GGGCuCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 5671 0.67 0.838361
Target:  5'- -----aGGCGCGAAGguGGGCCggCCGGGg -3'
miRNA:   3'- uuguuaCUGCGUUUU--CCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 79558 0.67 0.838361
Target:  5'- ----cUGGgGCucgcGGGGGGCgCCGGGCu -3'
miRNA:   3'- uuguuACUgCGu---UUUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41173 0.67 0.837519
Target:  5'- cGGCGcgGGCGCGcguguuaAGAGGGCgCCCagaaaaGGCg -3'
miRNA:   3'- -UUGUuaCUGCGU-------UUUCCCG-GGGc-----CCG- -5'
6603 3' -55.1 NC_001847.1 + 111339 0.67 0.837519
Target:  5'- gAGCAGUGgucgguggccgccGCGCu---GGGCgaccucgcgCCCGGGCa -3'
miRNA:   3'- -UUGUUAC-------------UGCGuuuuCCCG---------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 126217 0.68 0.829859
Target:  5'- gAGCuca-ACGCGGAGGcGGCCCCcuGGCg -3'
miRNA:   3'- -UUGuuacUGCGUUUUC-CCGGGGc-CCG- -5'
6603 3' -55.1 NC_001847.1 + 3988 0.68 0.829859
Target:  5'- gGGCcg-GGCGCGcggccccgcGGGGCgCCGGGCc -3'
miRNA:   3'- -UUGuuaCUGCGUuu-------UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 85920 0.68 0.829859
Target:  5'- cGCA--GACGUAcacGAAgcccgcGGGCCCCGGcGCg -3'
miRNA:   3'- uUGUuaCUGCGU---UUU------CCCGGGGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 27927 0.68 0.829859
Target:  5'- cGCGGagGACGCGGAcaggccuGGGCCgCGGcGCg -3'
miRNA:   3'- uUGUUa-CUGCGUUUu------CCCGGgGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 125076 0.68 0.829859
Target:  5'- cGGCGG-GGCGCu---GGGCCCgCGcGGCc -3'
miRNA:   3'- -UUGUUaCUGCGuuuuCCCGGG-GC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.