miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 70 0.66 0.891955
Target:  5'- -----cGGCGCGGc-GGGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGUUuuCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 216 0.69 0.74591
Target:  5'- -----cGGCGCccGGGGGCccgagCCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGuuUUCCCG-----GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 406 0.7 0.72585
Target:  5'- -----cGAC-CGAgaccGAGGGCCCgGGGCg -3'
miRNA:   3'- uuguuaCUGcGUU----UUCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 1532 0.66 0.905188
Target:  5'- -----cGGCGCGcgcGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGU---UUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 2072 0.76 0.396356
Target:  5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 2258 0.67 0.838361
Target:  5'- --aGGUGACGCGGc--GGCCCuCGGGa -3'
miRNA:   3'- uugUUACUGCGUUuucCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 2270 0.69 0.732914
Target:  5'- cGGCAcgcGGCGgAAGccgccgucggcggcGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGUua-CUGCgUUU--------------UCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 3700 0.69 0.74591
Target:  5'- gAACAcgGcCGC----GGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUuaCuGCGuuuuCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 3988 0.68 0.829859
Target:  5'- gGGCcg-GGCGCGcggccccgcGGGGCgCCGGGCc -3'
miRNA:   3'- -UUGuuaCUGCGUuu-------UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 5015 0.77 0.315786
Target:  5'- cGGCGGcGGCGCGGAGGGGaagCUCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGUUUUCCCg--GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 5361 0.67 0.870319
Target:  5'- -----cGGCGCGGccGGGCCCa-GGCu -3'
miRNA:   3'- uuguuaCUGCGUUuuCCCGGGgcCCG- -5'
6603 3' -55.1 NC_001847.1 + 5671 0.67 0.838361
Target:  5'- -----aGGCGCGAAGguGGGCCggCCGGGg -3'
miRNA:   3'- uuguuaCUGCGUUUU--CCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 7735 0.72 0.601054
Target:  5'- gGGCGcgGGCGCGGAGGcGGCggCCaGGGCa -3'
miRNA:   3'- -UUGUuaCUGCGUUUUC-CCG--GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 8105 0.75 0.413984
Target:  5'- cGACGcgGcgccaGCGCAGGcgcGGGGCCCCagGGGCg -3'
miRNA:   3'- -UUGUuaC-----UGCGUUU---UCCCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 8862 0.73 0.528851
Target:  5'- uGCugcUGGCGCAAuuGGGCCCCaGaGCg -3'
miRNA:   3'- uUGuu-ACUGCGUUuuCCCGGGGcC-CG- -5'
6603 3' -55.1 NC_001847.1 + 9041 0.66 0.877763
Target:  5'- cGCGAUGcgGCGCGAGGGGGCaauggacuUuuGGaGCg -3'
miRNA:   3'- uUGUUAC--UGCGUUUUCCCG--------GggCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 9948 0.68 0.802343
Target:  5'- cGCGGcccgGGCGCcuucugccccgagGAcuGGGCCCCGaGGCg -3'
miRNA:   3'- uUGUUa---CUGCG-------------UUuuCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 10005 0.73 0.50877
Target:  5'- cGGCAAUu-CGCAuccucgugugcGAGGGCUCCGGGCu -3'
miRNA:   3'- -UUGUUAcuGCGUu----------UUCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 10733 0.68 0.82117
Target:  5'- cAGCGAguuuaggGGgGC---GGGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUUa------CUgCGuuuUCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 12302 0.67 0.870319
Target:  5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3'
miRNA:   3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.